Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
CSAGQITQTSSQVAAVDGNQAGSANDPVLVRDVTVHLTTDGEAGVKFTAINQDTSHTSHTLESVTVDGEEVELDDAEPIE
RNCSLVADIQSELDLIEEPEVGCIQHVATSLENPGFAYGGVVPVEFVFDTGAITIDATVSAPVLESGVENREV

The query sequence (length=153) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7qhm:U 154 153 1.0000 0.9935 1.0000 4.68e-108 7q21:L, 7q21:l, 7qhm:H, 7qho:H, 7qho:U
2 7rh5:c 158 152 0.3072 0.2975 0.3092 0.027 6adq:K, 6adq:W, 8ovc:W, 8ovc:b, 8ovd:b, 8ovd:W, 7rh5:W, 7rh6:c, 7rh7:W, 7rh7:c
3 8jb1:A 468 41 0.0915 0.0299 0.3415 0.61 8jb1:B
4 8db6:B 304 88 0.1569 0.0789 0.2727 2.1 8db6:A, 8db6:C, 8db6:D, 8db7:B, 8db7:A, 8db7:C, 8db7:D, 8db8:B, 8db8:A, 8db8:C, 8db8:D, 8db9:A, 8db9:B, 8db9:C, 8db9:D
5 5kag:D 423 53 0.1111 0.0402 0.3208 3.7 5kag:A, 5kag:B, 5kag:C, 5kag:E, 5kag:F, 5kag:G, 5kag:H, 5kag:I, 5kag:J, 5kag:K, 5kag:L, 5kah:A, 5kah:B, 5kah:C, 5kah:D, 5kah:E, 5kah:F, 5kah:G, 5kah:H, 5kah:I, 5kah:J, 5kah:K, 5kah:L, 5kaj:A, 5kaj:B, 5kaj:C, 5kaj:D, 5kaj:E, 5kaj:F, 5kaj:G, 5kaj:H, 5kaj:I, 5kaj:J, 5kaj:K, 5kaj:L, 2np9:A, 2np9:B, 2np9:C, 2pg8:A, 2pg8:B, 2pg8:C, 4ylh:A, 4ylh:B, 4ylh:C, 4ylh:D, 4ylh:E, 4ylh:F, 4ylh:G, 4ylh:H, 4ylh:I, 4ylh:J, 4ylh:K, 4ylh:L
6 5knm:A 276 42 0.0719 0.0399 0.2619 3.8 5iue:A, 5iue:E, 5iue:G, 5iue:I
7 5dii:C 199 43 0.0850 0.0653 0.3023 3.9 5dii:A, 5dii:B, 5dii:D, 5dii:E, 5dii:F
8 8rbq:C 477 49 0.0980 0.0314 0.3061 4.1 8ahx:C, 8rb8:C, 8rb9:C, 8rbm:C
9 4ind:A 377 71 0.1307 0.0531 0.2817 4.9 4ind:E, 4ind:B, 4ind:C, 4ind:D, 4ind:F, 4ind:G, 4ind:H, 4ind:I, 4ind:J, 4ind:K, 4ind:O, 4ind:L, 4ind:M, 4ind:N, 4ind:P, 4ind:T, 4ind:Q, 4ind:R, 4ind:S
10 6wug:A 312 86 0.1569 0.0769 0.2791 4.9
11 4uyp:B 73 22 0.0784 0.1644 0.5455 9.9 4uyp:D, 4uyq:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218