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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
CRGDIEKVTHTGQVFDKEDYRNARFVNAKRYVNENWGIKLIEEVPPKECTERVVFCDGGDGPLGHPKVYINLDKPGNHIC
GYCGLRFVKK

The query sequence (length=90) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8esw:S6 90 90 1.0000 1.0000 1.0000 1.36e-63 8b9z:R, 8ba0:R, 8esz:S6
2 7b93:R 96 83 0.5444 0.5104 0.5904 4.91e-31 7ak5:R, 7ak6:R, 8c2s:R, 8ca3:R, 6g2j:R, 6g72:R, 8iao:R, 8iap:R, 8ib4:R, 8ib5:R, 8ib9:R, 8iba:R, 8ibd:R, 8ibe:R, 8ic2:R, 8ic3:R, 8olt:R, 8om1:R, 7psa:R, 8pw5:7, 8pw6:7, 8pw7:7, 8rgp:7, 8rgq:7, 8rgr:7, 8rgt:7, 6zr2:R, 6ztq:R
3 8q0a:R 96 86 0.5556 0.5208 0.5814 1.89e-30 7dgq:I, 7dgr:I, 7dgs:I, 7dgz:I, 7dh0:I, 7dkf:I2, 5lnk:b, 5o31:R, 8q0f:R, 8q0j:R, 8q0m:R, 8q0o:R, 8q0q:R, 8q1p:R, 8q1u:R, 8q1y:R, 8q25:R, 8q45:R, 8q46:R, 8q47:R, 8q48:R, 8q49:R, 8q4a:R, 6q9d:S6, 6qa9:S6, 6qbx:S6, 6qc2:S6, 6qc3:S6, 6qc4:S6, 6qc5:S6, 6qc6:S6, 6qc7:S6, 6qc8:S6, 7qsd:R, 7qsk:R, 7qsl:R, 7qsm:R, 7qsn:R, 7qso:R, 7r41:R, 7r42:R, 7r43:R, 7r44:R, 7r45:R, 7r46:R, 7r47:R, 7r48:R, 7r4c:R, 7r4d:R, 7r4f:R, 7r4g:R, 8ud1:1R, 8ueo:1R, 8uep:1R, 8ueq:1R, 8uer:1R, 8ues:1R, 8uet:1R, 8ueu:1R, 8uev:1R, 8uew:1R, 8uex:1R, 8uey:1R, 8uez:1R, 8ugh:1R, 8ugi:1R, 8ugj:1R, 8ugn:1R, 8ugn:5R, 8ugr:1R, 8ugr:5R, 7v2c:T, 7v2d:T, 7v2e:T, 7v2f:T, 7v2h:T, 7v2k:T, 7v2r:T, 7v30:T, 7v31:T, 7v32:T, 7v33:T, 7v3m:T, 7vb7:T, 7vbn:T, 7vbz:T, 7vwj:T, 7vxp:T, 7vxu:T, 7vy8:T, 7vya:T, 7vyf:T, 7vyh:T, 7vyn:T, 7vz1:T, 7vzv:T, 7vzw:T, 7w00:T, 7w0h:T, 7w0r:T, 7w0y:T, 7w1o:T, 7w1p:T, 7w1t:T, 7w1u:T, 7w1v:T, 7w1z:T, 7w20:T, 7w2k:T, 7w2l:T, 7w2r:T, 7w2u:T, 7w2y:T, 7w31:T, 7w32:T, 7w35:T, 7w4c:T, 7w4d:T, 7w4e:T, 7w4f:T, 7w4g:T, 7w4j:T, 7w4k:T, 7w4l:T, 7w4m:T, 7w4n:T, 7w4q:T, 7zd6:b, 7zdh:b, 7zdj:b, 7zdm:b, 7zdp:b, 7zeb:b, 6zk9:b, 6zkc:b, 6zkd:b, 6zke:b, 6zkf:b, 6zkg:b, 6zkh:b, 6zki:b, 6zkj:b, 6zkk:b, 6zkl:b, 6zkm:b, 6zkn:b, 6zko:b, 6zkp:b, 6zkq:b, 6zkr:b, 6zks:b, 6zkt:b, 6zku:b, 6zkv:b
4 7b0n:R 118 58 0.2889 0.2203 0.4483 1.01e-11 6gcs:M, 7o6y:M, 7o71:M, 6rfr:M, 6rfs:M, 6y79:M, 6yj4:R
5 8bed:R 73 53 0.2889 0.3562 0.4906 1.15e-09 7a23:P, 7a24:P, 7aqr:R, 7ar7:R, 7ar8:R, 7arb:R, 8bpx:R, 8bq5:R, 8bq6:R, 8e73:S6, 6x89:S6
6 5lc5:R 89 33 0.2556 0.2584 0.6970 6.69e-09 5ldw:R, 5ldx:R
7 7zm7:M 118 54 0.3111 0.2373 0.5185 4.37e-07 7zmb:M, 7zmg:M
8 8gym:s6 92 56 0.2889 0.2826 0.4643 2.71e-06 8b6f:BR, 8bqs:BR, 8gym:S6, 7tgh:S6
9 8qby:R 59 41 0.1889 0.2881 0.4146 0.007
10 2jz8:A 87 33 0.1111 0.1149 0.3030 0.17
11 8iuf:S6 147 70 0.2222 0.1361 0.2857 0.88 8j9h:S6, 8j9i:S6, 8j9j:S6
12 5t99:A 757 28 0.1444 0.0172 0.4643 1.6 5t99:B
13 1zj8:A 546 64 0.1778 0.0293 0.2500 1.9 1zj8:B, 1zj9:A, 1zj9:B
14 3ghe:L 214 55 0.1778 0.0748 0.2909 5.8 2jb5:L, 2jb6:A, 3u2s:L, 3u2s:B, 3u4e:B
15 1kyq:B 273 21 0.1111 0.0366 0.4762 6.9 1kyq:A, 1kyq:C
16 7jro:e 94 39 0.1556 0.1489 0.3590 8.3 7jrp:e
17 1bcf:A 158 69 0.1778 0.1013 0.2319 9.7 1bcf:B, 1bcf:C, 1bcf:D, 1bcf:E, 1bcf:F, 1bcf:G, 1bcf:H, 1bcf:I, 1bcf:J, 1bcf:K, 1bcf:L, 1bfr:A, 1bfr:B, 1bfr:C, 1bfr:D, 1bfr:E, 1bfr:F, 1bfr:G, 1bfr:H, 1bfr:I, 1bfr:J, 1bfr:K, 1bfr:L, 1bfr:M, 1bfr:N, 1bfr:O, 1bfr:P, 1bfr:Q, 1bfr:R, 1bfr:S, 1bfr:T, 1bfr:U, 1bfr:V, 1bfr:W, 1bfr:X, 4cvp:A, 4cvr:A, 4cvt:A, 3e1j:A, 3e1j:B, 3e1j:C, 3e1j:D, 3e1j:E, 3e1j:F, 3e1j:G, 3e1j:H, 3e1j:I, 3e1j:J, 3e1j:K, 3e1j:L, 3e1l:A, 3e1l:B, 3e1l:C, 3e1l:D, 3e1l:E, 3e1l:F, 3e1l:G, 3e1l:H, 3e1l:I, 3e1l:J, 3e1l:K, 3e1l:L, 3e1m:A, 3e1m:B, 3e1m:C, 3e1m:D, 3e1m:E, 3e1m:F, 3e1m:G, 3e1m:H, 3e1m:I, 3e1m:J, 3e1m:K, 3e1m:L, 3e1n:A, 3e1n:B, 3e1n:C, 3e1n:D, 3e1n:E, 3e1n:F, 3e1n:G, 3e1n:H, 3e1n:I, 3e1n:J, 3e1n:K, 3e1n:L, 3e1o:A, 3e1o:B, 3e1o:C, 3e1o:D, 3e1o:E, 3e1o:F, 3e1o:G, 3e1o:H, 3e1o:I, 3e1o:J, 3e1o:K, 3e1o:L, 3e1p:A, 3e1p:B, 3e1p:C, 3e1p:D, 3e1p:E, 3e1p:F, 3e1p:G, 3e1p:H, 3e1p:I, 3e1p:J, 3e1p:K, 3e1p:L, 3e1q:A, 3e1q:B, 3e1q:C, 3e1q:D, 3e1q:E, 3e1q:F, 3e1q:G, 3e1q:H, 3e1q:I, 3e1q:J, 3e1q:K, 3e1q:L, 3e2c:A, 3e2c:B, 3ghq:A, 3ghq:B, 3ghq:C, 3ghq:D, 3ghq:E, 3ghq:F, 3ghq:G, 3ghq:H, 3ghq:I, 3ghq:J, 3ghq:K, 3ghq:L, 2htn:A, 2htn:B, 2htn:C, 2htn:D, 2htn:E, 2htn:F, 2htn:G, 2htn:H, 6p8k:A, 6p8k:B, 6p8k:C, 6p8k:D, 6p8k:E, 6p8k:F, 6p8k:G, 6p8k:H, 6p8k:I, 6p8k:J, 6p8k:K, 6p8k:L, 6p8l:A, 6p8l:B, 6p8l:C, 6p8l:D, 6p8l:E, 6p8l:F, 6p8l:G, 6p8l:H, 6p8l:I, 6p8l:J, 6p8l:K, 6p8l:L, 2vxi:A, 2vxi:B, 2vxi:C, 2vxi:D, 2vxi:E, 2vxi:F, 2vxi:G, 2vxi:H, 2vxi:I, 2vxi:J, 2vxi:K, 2vxi:L, 2y3q:A, 2y3q:B, 2y3q:C, 2y3q:D, 2y3q:E, 2y3q:F, 2y3q:G, 2y3q:H, 2y3q:I, 2y3q:J, 2y3q:K, 2y3q:L

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417