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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
CLQNGTRLLRADGSEVLVEDVQEGDQLLGPDGTSRTASKIVRGEERLYRIKTHEGLEDLVCTHNHILSMYKERESHERVD
VTVDDFVRLPQQEQQKYKLFRSTDATLLHINSIELEEEPTKWSGFVVDKDSLYLRYDYLVLHN

The query sequence (length=143) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6owu:F 143 143 1.0000 1.0000 1.0000 5.76e-104
2 1lws:A 427 50 0.1329 0.0445 0.3800 8.43e-07 1ef0:A, 1um2:A, 1um2:B
3 1lwt:A 448 50 0.1329 0.0424 0.3800 9.56e-07
4 1ef0:B 394 50 0.1259 0.0457 0.3600 2.23e-05
5 8gxu:B 578 101 0.2168 0.0536 0.3069 0.099 3a5c:A, 3a5c:C, 3a5c:I, 3a5c:K, 8gxw:B, 8gxw:C, 8gxx:A, 8gxx:B, 8gxx:C, 8gxz:C, 3j0j:A, 3j0j:C, 6ly8:A, 6qum:A, 6r0w:C, 6r0y:B, 6r0z:A, 6r10:A, 7val:A, 7val:B, 7val:C, 7vam:A, 7vam:B, 7vam:C, 7van:A, 7van:B, 7van:C, 7vao:A, 7vao:B, 7vao:C, 7vap:A, 7vap:B, 7vap:C, 7vaq:A, 7vaq:B, 7vaq:C, 7var:A, 7var:C, 7vas:A, 7vas:C, 7vat:A, 7vat:C, 7vau:A, 7vau:C, 7vav:A, 7vav:C, 7vaw:A, 7vaw:B, 7vaw:C, 7vax:A, 7vax:C, 7vax:B, 7vay:A, 7vay:B, 7vay:C, 7vb0:A, 7vb0:B, 7vb0:C, 3w3a:A, 3w3a:C, 3w3a:I, 3w3a:K, 5y5x:A, 5y5x:C, 5y5y:A, 5y5y:C, 5y5z:B, 5y5z:C, 5y60:A, 5y60:B
6 2ri1:A 235 46 0.1119 0.0681 0.3478 1.6 2ri1:B
7 4mvn:D 200 73 0.1538 0.1100 0.3014 2.1 4mvn:A, 4mvn:B, 4mvn:C, 3ufa:A, 3ufa:B
8 8tfo:A 390 61 0.1399 0.0513 0.3279 2.7 8tfo:B
9 5jb3:M 133 31 0.0769 0.0827 0.3548 5.8 5jbh:M, 6skf:An, 6skg:An, 6sw9:M, 6swc:M, 6swd:M, 6th6:An, 6tmf:N, 4v4n:BM, 4v6u:AM, 7zag:M, 7zah:M, 7zai:M, 7zhg:M
10 5uwu:C 998 49 0.1259 0.0180 0.3673 6.4 6a38:C, 6a3a:C, 6a3b:C, 6a3c:C, 6a3e:C, 6cit:C, 7cnd:C, 5dh9:C, 5dha:C, 5dhf:C, 5di9:C, 5dif:C, 8hq3:C, 8hq4:C, 8hq5:C, 8hq6:C, 8huf:C, 8hug:C, 8itv:C, 6kft:C, 6m60:C, 6m6x:C, 5uwj:C, 5uwo:C, 5uwp:C, 5uws:C, 6x2p:C, 6x2r:C, 6x2s:C, 6x2u:C, 6x2v:C, 6x2w:C, 6x2x:C, 6x2y:C, 7ypz:C
11 4ic5:A 210 32 0.0979 0.0667 0.4375 6.6 4ic5:B, 4ic5:C
12 8uw3:A 1265 62 0.1119 0.0126 0.2581 7.6 7n8s:A, 7n94:A, 7n94:B, 8sp5:A, 8sp5:B, 8sp7:A, 8sxt:A, 8sxu:A, 1vyb:B
13 6rxt:CQ 175 40 0.0909 0.0743 0.3250 8.3 6rxu:CQ, 6rxv:CQ, 6rxx:CQ, 6rxy:CQ, 6rxz:CQ
14 1s56:B 135 49 0.0909 0.0963 0.2653 9.3 5ab8:A, 2gkm:A, 2gkm:B, 2gkn:A, 2gkn:B, 2gl3:A, 2gl3:B, 2gln:A, 2gln:B, 1idr:A, 1idr:B, 1rte:A, 1rte:B, 1s56:A, 1s61:A, 1s61:B
15 6a8a:A 327 77 0.1329 0.0581 0.2468 9.9 6a8a:B, 6a8b:A, 6a8b:B, 6a8c:A, 6a8c:B, 5zwy:A, 5zwy:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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