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BioLiP
>protein
CCGPKLAACGIVLSAWGVIMLIMLGIFFNVHSAVLIEDVPFTEKDFENGPQNIYNLYEQVSYNCFIAAGLYLLLGGFSFC
QVRLN

The query sequence (length=85) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 9b8o:f 86 85 1.0000 0.9884 1.0000 6.56e-59 9brd:f, 6wlw:T, 6wm2:T
2 4ptv:A 445 53 0.2000 0.0382 0.3208 4.5 4ptv:B, 4ptw:A, 4ptw:B, 4ptx:A, 4ptx:B
3 3u9j:A 157 51 0.2000 0.1083 0.3333 8.2 3u9j:B, 3u9m:A, 3u9m:C, 3u9m:E, 3u9m:G, 3v5x:A, 3v5x:B, 3v5y:A, 3v5y:B, 3v5y:C, 3v5y:D, 3v5z:A, 3v5z:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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