Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
CAEFRIKYVGAIEGPLDLINYIDVAQQDGKLPFVPPEEEFIMGVSKYGIKVSTLHRHALIIRMVCYDDGKSLLALKTTYS
LWVYQCNSLEQAQAICKVLSTAFDS

The query sequence (length=105) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4dx9:0 110 110 0.9714 0.9273 0.9273 7.00e-66 4dx9:k, 4dx9:3, 4dx9:A, 4dx9:s, 4dx9:u, 4dx9:i, 4dx9:U
2 4jif:A 130 129 1.0000 0.8077 0.8140 3.21e-64 4dx9:m, 4dx9:1, 4dx9:C, 4dx9:G, 4dx9:E, 4dx9:I, 4dx9:4, 4dx9:K, 4dx9:5, 4dx9:M, 4dx9:c, 4dx9:e, 4dx9:g, 4dx9:Q, 4dx9:S, 4dx9:W, 4dx9:Y
3 4dx9:O 102 113 0.8857 0.9118 0.8230 4.72e-55 4dx9:a
4 4dx9:y 93 105 0.8286 0.9355 0.8286 1.99e-51
5 4dx9:2 91 107 0.8095 0.9341 0.7944 6.95e-46
6 4dx9:o 63 103 0.5429 0.9048 0.5534 1.36e-17
7 6st5:A 913 30 0.1143 0.0131 0.4000 0.28
8 6yxx:ED 598 55 0.1619 0.0284 0.3091 1.0 7aoi:XC, 6yxy:ED
9 5o1n:A 442 52 0.1429 0.0339 0.2885 2.7 5l78:A, 5l78:B, 5o1o:A, 5o1o:B
10 4fo0:A 502 24 0.0952 0.0199 0.4167 3.2
11 6tgv:C 389 37 0.1333 0.0360 0.3784 4.7 8ow5:A, 8ow5:B, 8ow5:C, 8ow5:D, 8owb:A, 8owb:B, 8owb:C, 8owb:D, 8owp:A, 8owp:B, 8owp:C, 8owp:D, 8owq:A, 8owq:B, 8owq:C, 8owq:D, 8owr:A, 8owr:C, 8owr:D, 4qji:A, 4qji:B, 6tgv:A, 6tgv:B, 6tgv:D, 6th2:A, 6th2:C, 6thc:A, 6thc:B, 6thc:C, 6thc:D
12 8unf:A 187 49 0.1524 0.0856 0.3265 5.4 3u5z:A, 3u5z:K, 3u60:A, 8uh7:A, 8uk9:A, 8uk9:Q
13 3a31:A 465 28 0.0952 0.0215 0.3571 6.3 3a32:A
14 6nf1:A 550 42 0.1238 0.0236 0.3095 6.9 3bji:A, 3bji:B, 3ky9:A, 3ky9:B, 6new:A, 6nfa:A, 2vrw:B
15 2rgo:B 530 30 0.1048 0.0208 0.3667 8.2
16 2rgo:A 557 30 0.1048 0.0197 0.3667 8.2 2rgh:A
17 3o0h:B 459 63 0.1810 0.0414 0.3016 9.7 3o0h:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218