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BioLiP Library
>protein
CAEFGPLDLINYIDLPFVPMGVSGIKVRMVCYDSLLALKTTDAYSLWVYQLEQAQAICDSVLT

The query sequence (length=63) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4dx9:o 63 63 1.0000 1.0000 1.0000 2.80e-42
2 4dx9:y 93 89 0.8571 0.5806 0.6067 3.28e-20
3 4dx9:2 91 94 0.8571 0.5934 0.5745 4.55e-17
4 4dx9:O 102 81 0.7619 0.4706 0.5926 1.26e-16 4dx9:a
5 4jif:A 130 106 0.8730 0.4231 0.5189 2.00e-16 4dx9:m, 4dx9:1, 4dx9:C, 4dx9:G, 4dx9:E, 4dx9:I, 4dx9:4, 4dx9:K, 4dx9:5, 4dx9:M, 4dx9:c, 4dx9:e, 4dx9:g, 4dx9:Q, 4dx9:S, 4dx9:W, 4dx9:Y
6 4dx9:0 110 114 0.9365 0.5364 0.5175 1.02e-15 4dx9:k, 4dx9:3, 4dx9:A, 4dx9:s, 4dx9:u, 4dx9:i, 4dx9:U
7 4eei:B 423 31 0.2063 0.0307 0.4194 0.75 4eei:A, 5hw2:A, 5hw2:C
8 1kfd:A 560 56 0.2698 0.0304 0.3036 6.2
9 1kv9:A 664 60 0.2381 0.0226 0.2500 9.2
10 5w1h:A 1301 14 0.1270 0.0061 0.5714 9.8 5w1i:A, 5w1i:C, 5wlh:A
11 7w7g:A 1528 32 0.1746 0.0072 0.3438 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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