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BioLiP
>protein
AYKVTLKTPDGDITFDVEPGERLIDIGSEKADLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPE
SDVVIETHKEDEL

The query sequence (length=93) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1wri:A 93 93 1.0000 1.0000 1.0000 3.90e-63
2 1frr:A 95 94 0.6882 0.6737 0.6809 6.24e-42 1frr:B
3 3av8:A 97 95 0.6237 0.5979 0.6105 1.83e-34 3av8:B, 3av8:C, 3av8:D, 1fxi:A, 1fxi:B, 1fxi:C, 1fxi:D
4 6yac:N 97 94 0.6129 0.5876 0.6064 5.66e-34 6yez:N
5 6xtf:D 96 93 0.6022 0.5833 0.6022 6.14e-34 6xtf:C
6 1pfd:A 96 93 0.5699 0.5521 0.5699 4.22e-33
7 5auk:A 96 94 0.5806 0.5625 0.5745 1.11e-32 1dox:A, 1doy:A, 2kaj:A, 1off:A, 2pvg:C, 2pvo:D
8 1rfk:B 97 95 0.6237 0.5979 0.6105 5.70e-32 3p63:A, 3p63:B, 1rfk:A
9 6khi:1 98 94 0.5914 0.5612 0.5851 5.93e-32 5aui:A, 7fix:R1, 7fix:R2, 7fix:R3, 6jo2:A, 6l7o:R, 1roe:A, 5zf0:P1, 5zf0:P2, 5zf0:P3, 5zf0:P4, 5zf0:P6, 5zf0:P5
10 4zhp:A 98 94 0.5699 0.5408 0.5638 6.13e-32
11 1czp:A 98 95 0.6022 0.5714 0.5895 1.89e-31 1czp:B, 1ewy:C, 1fxa:A, 1fxa:B, 1j7a:A, 1j7b:A, 1j7c:A, 1qoa:A, 1qoa:B, 1qob:A, 1qob:B, 1qof:A, 1qof:B, 1qog:A, 1qog:B, 1qt9:A
12 7s3d:X 97 96 0.5806 0.5567 0.5625 2.98e-31 7s3d:W, 7s3d:x
13 7akt:A 107 93 0.5376 0.4673 0.5376 9.74e-31 6kum:A, 6kum:B, 6kv0:A, 6kv0:B, 6lk1:A, 6lk1:B, 2mh7:A, 2n0s:B, 7wzn:G
14 1gaq:B 98 93 0.5699 0.5408 0.5699 1.25e-30 3b2f:A, 3b2f:B, 5h8y:E, 5h8y:F, 5h92:C, 3w5u:B, 3w5u:D, 3w5u:F, 3w5u:H, 3w5v:B, 3w5v:D
15 1a70:A 97 94 0.5376 0.5155 0.5319 1.28e-30
16 4itk:A 104 93 0.5484 0.4904 0.5484 1.33e-30
17 4zho:A 97 93 0.5484 0.5258 0.5484 1.47e-30 4zho:B
18 1awd:A 94 93 0.5591 0.5532 0.5591 7.23e-30
19 5h57:A 97 94 0.5699 0.5464 0.5638 3.89e-29 5h57:B, 5h57:C, 5h57:D, 5h57:E, 5h57:F, 5h5j:B
20 3b2g:A 98 96 0.5699 0.5408 0.5521 4.14e-29 3b2g:B
21 4fxc:A 98 95 0.5699 0.5408 0.5579 4.40e-28
22 3ab5:A 97 95 0.5161 0.4948 0.5053 3.38e-27 3ab5:B, 3wcq:A
23 1iue:A 98 93 0.4731 0.4490 0.4731 4.06e-27 1iue:B
24 6vjv:A 96 95 0.4731 0.4583 0.4632 2.02e-26 6vjv:B
25 7y5e:NN 99 95 0.5269 0.4949 0.5158 3.21e-25 7y5e:N2, 7y7a:N7, 7y7a:No
26 6iri:A 107 95 0.4624 0.4019 0.4526 5.04e-22
27 4n58:A 266 62 0.3763 0.1316 0.5645 2.53e-17 4n58:B, 4n59:A, 4n59:B
28 8jc1:A 267 93 0.4301 0.1498 0.4301 2.64e-17 8jc1:B, 8jc1:C, 8jc1:D
29 1frd:A 98 96 0.4409 0.4184 0.4271 1.24e-13
30 1krh:A 337 98 0.3441 0.0950 0.3265 7.88e-10 1krh:B
31 1doi:A 128 73 0.2796 0.2031 0.3562 1.45e-09
32 1e0z:A 128 73 0.2903 0.2109 0.3699 4.47e-09 1e10:A
33 3zyy:X 628 48 0.2366 0.0350 0.4583 7.38e-07 4c1n:J, 4c1n:I, 4c1n:K, 4c1n:X, 3zyy:Y
34 5ogx:A 333 75 0.2581 0.0721 0.3200 1.42e-04
35 6icm:D 87 86 0.2688 0.2874 0.2907 2.46e-04
36 2pia:A 321 78 0.1828 0.0530 0.2179 0.004
37 3lec:A 225 38 0.1720 0.0711 0.4211 0.093
38 1jq4:A 98 89 0.3011 0.2857 0.3146 0.12
39 7c3b:B 306 65 0.2151 0.0654 0.3077 0.19
40 6laa:A 753 85 0.1828 0.0226 0.2000 0.19 6gii:A, 6ldl:A
41 5frt:A 119 61 0.1828 0.1429 0.2787 0.31 5ffi:A, 5ffi:B, 5ffi:C, 5ffi:D, 5frt:B, 5frt:C, 5frt:D, 6yav:E, 6yav:A, 6yav:B, 6yav:C, 6yav:D
42 5frt:E 105 50 0.1720 0.1524 0.3200 0.43 5ffi:E
43 7c3b:C 334 65 0.2151 0.0599 0.3077 0.48 7c3a:A, 7c3a:B, 7c3a:C, 7c3b:A
44 7ylr:A 326 64 0.1613 0.0460 0.2344 0.67
45 7f42:A 200 57 0.1720 0.0800 0.2807 1.0 6ek3:A, 6ek3:B, 4f0e:A, 4f0e:C, 4f0e:D, 7f41:B, 7f43:B, 3gey:A, 3gey:B, 7oqq:A, 7osp:A, 7oss:A, 7osx:A, 7otf:A, 7oth:A, 7ouw:A, 7oux:A, 7pw3:A, 7pwa:A, 7pwc:A, 7pwk:A, 7pwl:A, 7pwm:A, 7pwp:A, 7pwq:A, 7pwr:A, 7pws:A, 7pwu:A, 7pww:A, 7px6:A, 7px7:A, 7r3o:A, 7r4a:A, 7r5d:A, 6ry4:A, 7z1v:A, 7z1w:A, 7z1y:A, 7z2o:A, 7z2q:A, 7z41:A
46 7uhe:C 74 22 0.1183 0.1486 0.5000 2.3 8u77:A, 8u77:C, 8u77:E, 8u77:G, 7uhe:A
47 6efn:A 383 29 0.1398 0.0339 0.4483 3.8
48 7k5b:B 4524 33 0.1075 0.0022 0.3030 4.4 8bx8:B, 7k58:B, 7kek:B
49 6kbh:A 765 76 0.1935 0.0235 0.2368 5.6
50 4il8:A 459 40 0.1505 0.0305 0.3500 6.4 3bkq:X, 3c04:A, 2fkf:A, 2fkm:X, 2h4l:X, 2h5a:X, 1k2y:X, 1k35:A, 4mrq:A, 1p5d:X, 1p5g:X, 1pcj:X, 1pcm:X, 3rsm:A
51 7d6v:B 239 45 0.1613 0.0628 0.3333 7.6 7d6x:B
52 7dex:A 460 23 0.1183 0.0239 0.4783 7.6
53 8vc5:A 488 17 0.0860 0.0164 0.4706 8.5 8vc5:B
54 8fky:SW 448 40 0.1398 0.0290 0.3250 8.8 8fkp:SW, 8fkq:SW, 8fkr:SW, 8fks:SW, 8fkt:SW, 8fku:SW, 8fkv:SW, 8fkw:SW, 8fkx:SW, 3ly5:A
55 3kq0:A 175 29 0.1398 0.0743 0.4483 8.9
56 6rxt:UL 785 24 0.1290 0.0153 0.5000 9.9 6rxu:UL, 6rxv:UL, 6rxx:UL, 6rxy:UL, 6rxz:UL

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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