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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
AWKVSVDQDTCIGCAICASLCPDVFEMNDEGKAQPKVEVIEDEELYNCAKEAMEACPVSAITIEEA

The query sequence (length=66) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4dhv:B 66 66 1.0000 1.0000 1.0000 7.84e-43 4dhv:A, 3pni:A, 3pni:B, 1siz:A, 1siz:C, 1sj1:A, 1sj1:B, 2z8q:A, 2z8q:B
2 1rof:A 60 64 0.4848 0.5333 0.5000 1.73e-17 1vjw:A
3 1f2g:A 58 55 0.3636 0.4138 0.4364 2.81e-09 1fxd:A
4 1dwl:A 59 61 0.3788 0.4237 0.4098 8.04e-09
5 4ov1:A 66 62 0.3636 0.3636 0.3871 1.55e-08 4id8:A
6 8amp:A 65 68 0.3333 0.3385 0.3235 7.86e-06
7 8amq:A 464 63 0.2879 0.0409 0.3016 1.05e-05 8amo:A, 8ckn:A
8 1dax:A 64 67 0.4394 0.4531 0.4328 6.22e-05 1dfd:A, 1fxr:A, 1fxr:B
9 7m1n:A 71 70 0.3333 0.3099 0.3143 1.76e-04 7m1n:B, 7m1o:A, 7m1o:B
10 8a8o:D 102 59 0.2576 0.1667 0.2881 6.71e-04 8a8o:C
11 8c0z:C 158 63 0.3788 0.1582 0.3968 0.005 8c0z:F
12 5t61:L 348 71 0.3485 0.0661 0.3239 0.008 5t5i:F, 5t5i:N, 5t5m:F, 5t61:F, 5t61:R, 5t61:X, 5t61:d, 5t61:j, 5t61:p, 5t61:v
13 5t61:L 348 62 0.3182 0.0603 0.3387 0.011 5t5i:F, 5t5i:N, 5t5m:F, 5t61:F, 5t61:R, 5t61:X, 5t61:d, 5t61:j, 5t61:p, 5t61:v
14 5t61:L 348 64 0.3030 0.0575 0.3125 0.084 5t5i:F, 5t5i:N, 5t5m:F, 5t61:F, 5t61:R, 5t61:X, 5t61:d, 5t61:j, 5t61:p, 5t61:v
15 5t61:L 348 74 0.3485 0.0661 0.3108 0.30 5t5i:F, 5t5i:N, 5t5m:F, 5t61:F, 5t61:R, 5t61:X, 5t61:d, 5t61:j, 5t61:p, 5t61:v
16 7bgi:C 80 59 0.3333 0.2750 0.3729 0.014 7blx:C, 8cmo:C, 7d0j:C, 7dz7:C, 7dz8:C, 8h2u:C, 6ijj:C, 6ijo:C, 6jo5:C, 6jo6:C, 7r3k:C, 7wyi:C, 7wzn:C, 7zq9:C, 7zqc:C, 7zqd:C, 7zqd:C2
17 7ew6:C 81 59 0.3333 0.2716 0.3729 0.014 7a4p:C, 8bcv:C, 8bcw:C, 7dkz:C, 7ewk:C, 7f9o:C, 7f9o:g, 8htu:C, 6igz:C, 8j6z:C, 8j7a:C, 8j7b:C, 7ksq:C, 7kux:C, 6l35:C, 5l8r:C, 3lw5:C, 6ly5:c, 2o01:C, 4rku:C, 7wfd:AC, 7wfe:BC, 7wg5:AC, 7wg5:BC, 8wgh:C, 2wsc:C, 2wse:C, 2wsf:C, 4xk8:C, 4xk8:c, 7xqp:C, 4y28:C, 6yac:C, 7yca:C, 6yez:C, 5zji:C, 6zoo:C, 6zxs:C
18 7dr0:C 80 59 0.3333 0.2750 0.3729 0.018 7dr1:C, 7dr2:aC, 7dr2:bC, 7dr2:cC, 7dr2:dC, 6zzx:C, 6zzy:C
19 8wm6:C 80 59 0.3333 0.2750 0.3729 0.028 8wmj:C, 8wmv:C, 8wmw:C, 7y5e:CN, 7y5e:C2, 7y7a:C7, 7y7a:Co, 7y7b:C, 7y8a:C
20 8jjr:c 86 59 0.3182 0.2442 0.3559 0.031 8jw0:c, 8jze:c, 8jzf:c
21 5oy0:c 81 59 0.3485 0.2840 0.3898 0.034 8am5:c, 8asl:c, 8asp:c, 7blz:C, 7coy:aC, 7coy:bC, 7coy:cC, 7dwq:C, 7f4v:aC, 7f4v:bC, 7f4v:cC, 4fe1:C, 7fix:C1, 7fix:C2, 7fix:C3, 6fos:C, 6hqb:C, 1jb0:C, 6jeo:aC, 6jeo:bC, 6jeo:cC, 6jeo:dC, 1k0t:A, 6k33:aC, 6k33:bC, 6k33:cC, 6k61:C, 6k61:c, 6kif:C, 6kif:N, 6kif:g, 6kig:C, 6kig:N, 6kig:g, 6kmw:aC, 6kmw:bC, 6kmw:cC, 6kmx:aC, 6kmx:bC, 6kmx:cC, 4kt0:C, 6l4u:C, 4l6v:C, 4l6v:c, 4l6v:3, 6lu1:C, 7lx0:N, 7lx0:c, 7lx0:C, 7m75:C, 7m76:C, 7m78:C, 6nwa:C, 6nwa:c, 6nwa:N, 7o1v:C, 5oy0:C, 5oy0:3, 3pcq:C, 6pfy:C, 6pfy:N, 6pfy:a, 6pgk:C, 6pgk:N, 6pgk:a, 6pnj:C, 6pnj:N, 6pnj:c, 7qco:C, 7qco:H, 7qco:h, 7qco:c, 6qph:C, 6rhz:C, 7s3d:C, 7s3d:N, 7s3d:c, 6sl5:C, 6tcl:C1, 6tcl:C2, 6tcl:C, 6tcl:CC, 6tra:C, 6trc:C, 6trc:c, 6trc:3, 6trd:C, 6trd:c, 6trd:3, 7umh:C, 7umh:N, 7umh:c, 6uzv:C, 6uzv:c, 6uzv:3, 6vpv:C, 6vpv:c, 6vpv:3, 8wey:C, 7y3f:C, 6yxr:C, 5zf0:C1, 5zf0:C2, 5zf0:C3, 5zf0:C4, 5zf0:C6, 5zf0:C5, 5zgb:C, 5zgh:C
22 6tmf:d 582 15 0.1364 0.0155 0.6000 0.064 3ozx:A, 3ozx:B
23 7qv7:D 448 32 0.2121 0.0312 0.4375 0.089 7qv7:K, 7qv7:Q, 7qv7:R, 7qv7:V, 7qv7:Z
24 3ge1:A 499 61 0.3030 0.0401 0.3279 0.15 3ge1:B, 3ge1:C, 3ge1:D
25 7p8n:B 613 18 0.1364 0.0147 0.5000 0.20 7p5h:B, 7p5h:E, 7p5h:b, 7p5h:e, 7p8n:b, 7p91:b, 7p91:B, 7p92:B
26 7p8n:B 613 59 0.2879 0.0310 0.3220 0.38 7p5h:B, 7p5h:E, 7p5h:b, 7p5h:e, 7p8n:b, 7p91:b, 7p91:B, 7p92:B
27 8oh5:B 584 18 0.1364 0.0154 0.5000 0.31 8oh5:E, 8oh5:H, 8oh5:K, 8oh9:B, 8oh9:E, 8oh9:H, 8oh9:K
28 7q4v:B 599 17 0.1515 0.0167 0.5882 0.37 8a5e:B, 7q4v:F, 7q4w:B, 7q4w:F
29 1hfe:L 396 60 0.2879 0.0480 0.3167 0.41 8bj7:A, 8bj8:A, 1e08:A, 1gx7:A, 1hfe:M, 6sg2:AAA
30 8k9e:B 951 21 0.1212 0.0084 0.3810 0.46 8k9f:B, 8x2j:B
31 7bkc:K 321 18 0.1364 0.0280 0.5000 0.53 7bkc:k
32 7bkc:K 321 19 0.1364 0.0280 0.4737 1.4 7bkc:k
33 7bkc:K 321 20 0.1364 0.0280 0.4500 4.8 7bkc:k
34 1fca:A 55 20 0.1515 0.1818 0.5000 0.56 1fdn:A, 2fdn:A
35 7bkb:K 386 18 0.1364 0.0233 0.5000 0.59 7bkb:k, 7bkc:M, 7bkc:m
36 7bkb:K 386 64 0.3182 0.0544 0.3281 1.0 7bkb:k, 7bkc:M, 7bkc:m
37 7bkb:K 386 19 0.1364 0.0233 0.4737 1.6 7bkb:k, 7bkc:M, 7bkc:m
38 7bkb:K 386 20 0.1364 0.0233 0.4500 5.3 7bkb:k, 7bkc:M, 7bkc:m
39 1gth:A 1019 14 0.1364 0.0088 0.6429 0.62 8f5w:A, 8f5w:B, 8f5w:C, 8f5w:D, 8f61:A, 8f61:B, 8f61:C, 8f61:D, 8f6n:A, 8f6n:B, 8f6n:C, 8f6n:D, 1gt8:A, 1gt8:B, 1gt8:C, 1gt8:D, 1gte:A, 1gte:B, 1gte:C, 1gte:D, 1gth:B, 1gth:C, 1gth:D, 1h7w:A, 1h7w:B, 1h7w:C, 1h7w:D, 1h7x:A, 1h7x:B, 1h7x:C, 1h7x:D, 7ljs:A, 7ljs:B, 7ljs:C, 7ljs:D, 7ljt:A, 7ljt:B, 7ljt:C, 7ljt:D, 7lju:A, 7lju:C, 7lju:D, 7lju:B, 7m31:A, 7m31:B, 7m31:C, 7m31:D, 7m32:A, 7m32:B, 7m32:C, 7m32:D
40 8a6t:B 630 56 0.3182 0.0333 0.3750 0.64 8a6t:E, 8bew:B, 8bew:E
41 1iqz:A 81 65 0.3182 0.2593 0.3231 0.67 1ir0:A, 1wtf:A, 1wtf:B, 1wtf:C, 1wtf:D, 7yl8:A
42 6u8y:N 176 18 0.1212 0.0455 0.4444 0.67 6u8y:n
43 7plm:A 1177 21 0.1061 0.0059 0.3333 0.71 7plm:B
44 1b0p:A 1231 21 0.1061 0.0057 0.3333 0.76 1b0p:B, 2c3m:A, 2c3m:B, 2c3o:A, 2c3o:B, 2c3p:A, 2c3p:B, 2c3u:A, 2c3u:B, 2c3y:A, 2c3y:B, 2c42:A, 2c42:B, 1kek:A, 1kek:B, 2pda:A, 2pda:B, 2uza:A, 2uza:B
45 8b6f:AL 218 59 0.2879 0.0872 0.3220 0.90 8bqs:AL, 8gym:s8, 8gym:S8, 8gzu:s8, 8gzu:S8, 7tgh:S8
46 1dur:A 55 18 0.1515 0.1818 0.5556 0.95
47 1clf:A 55 17 0.1515 0.1818 0.5882 1.1
48 1clf:A 55 61 0.2879 0.3455 0.3115 7.1
49 3bk7:A 593 21 0.1212 0.0135 0.3810 1.1 3j15:B, 5lw7:B, 1yqt:A, 5yv5:A
50 7qv7:B 183 75 0.2879 0.1038 0.2533 1.1 7qv7:C, 7qv7:J, 7qv7:N, 7qv7:P, 7qv7:X
51 7o80:Bz 595 22 0.1515 0.0168 0.4545 1.1 7a09:J, 6hcf:k1, 6hcm:k1, 3jag:jj, 3jah:jj, 3jai:jj, 5lzv:jj, 8p03:k, 8p09:k, 8scb:jj, 6yal:k, 6yam:k, 6zme:CI, 6zvj:1
52 6cfw:N 121 20 0.1212 0.0661 0.4000 1.3
53 5odc:A 653 29 0.1515 0.0153 0.3448 1.4 5odc:G, 5odh:A, 5odh:G, 5odi:A, 5odi:G, 5odq:A, 5odq:G, 5odr:A, 5odr:G
54 5odc:A 653 18 0.1364 0.0138 0.5000 3.8 5odc:G, 5odh:A, 5odh:G, 5odi:A, 5odi:G, 5odq:A, 5odq:G, 5odr:A, 5odr:G
55 8cas:k 579 12 0.1212 0.0138 0.6667 1.4 5ll6:h, 6zce:k, 6zu9:k
56 4crm:P 608 12 0.1212 0.0132 0.6667 1.5 7a1g:x, 8cah:x, 3j16:B
57 7vw6:A 913 67 0.3182 0.0230 0.3134 1.8 7e5z:A, 8j83:A, 7xqw:A
58 7zc6:B 202 28 0.1818 0.0594 0.4286 1.8
59 1kqf:B 289 61 0.2424 0.0554 0.2623 2.4 1kqg:B
60 7z0s:B 170 66 0.3030 0.1176 0.3030 2.7 7z0t:B
61 2v4j:A 436 31 0.1515 0.0229 0.3226 2.8 2v4j:D
62 4hea:9 180 65 0.2727 0.1000 0.2769 2.9 2fug:9, 2fug:G, 2fug:P, 2fug:Y, 4hea:O, 6i0d:9, 6i0d:O, 6i1p:9, 6i1p:O, 3i9v:9, 3i9v:G, 3iam:9, 3iam:G, 3ias:9, 3ias:G, 3ias:P, 3ias:Y, 3m9s:9, 3m9s:G, 6q8o:9, 6q8o:O, 6q8w:9, 6q8w:O, 6q8x:9, 6q8x:O, 6y11:9, 6y11:O, 2ybb:8, 6ziy:9, 6zjl:9, 6zjn:9, 6zjy:9
63 4g68:A 392 29 0.1970 0.0332 0.4483 3.0 4g68:B
64 6qgr:G 253 17 0.1212 0.0316 0.4706 3.0 6qgt:G, 6qii:G
65 2vkr:A 103 65 0.3030 0.1942 0.3077 3.1 2vkr:B, 2vkr:C, 2vkr:D, 2vkr:E, 2vkr:F, 2vkr:G, 1xer:A
66 7q5y:D 197 63 0.2576 0.0863 0.2698 3.3 7q5y:J, 7q5y:P, 7q5y:V
67 7bkd:A 664 30 0.1818 0.0181 0.4000 3.5 7bkb:A, 7bkb:a, 7bkc:A, 7bkc:a, 7bkd:a, 7bke:A, 7bke:a
68 4z3w:F 170 42 0.1818 0.0706 0.2857 3.8 4z3w:E, 4z3w:G, 4z3w:H, 4z3x:E, 4z3x:F, 4z3x:G, 4z3x:H, 4z3y:E, 4z3y:F, 4z3y:G, 4z3y:H, 4z3z:E, 4z3z:F, 4z3z:G, 4z3z:H, 4z40:E, 4z40:F, 4z40:G, 4z40:H
69 6brh:B 502 28 0.1818 0.0239 0.4286 4.1 6brg:A, 6brg:B, 6brg:C, 6brg:D, 6brh:A, 6brk:A
70 2vpw:F 193 33 0.1667 0.0570 0.3333 4.2 2vpw:B, 2vpx:F, 2vpx:B, 2vpy:F, 2vpy:B, 2vpz:F, 2vpz:B
71 9awj:B 408 35 0.2121 0.0343 0.4000 4.8
72 6hum:I 193 20 0.1061 0.0363 0.3500 4.8 6khi:I, 6khj:I, 6l7o:I, 6l7p:I, 6nbq:I, 6nbx:I, 6nby:I, 6tjv:I
73 6xyw:Az 82 17 0.1364 0.1098 0.5294 5.0
74 3egw:B 509 19 0.1364 0.0177 0.4737 5.0 3ir5:B, 3ir6:B, 3ir7:B, 1q16:B, 1r27:B, 1r27:D, 1siw:B, 1y4z:B, 1y5i:B, 1y5l:B, 1y5n:B
75 7wfg:I 160 20 0.1061 0.0437 0.3500 5.2 7wg5:I
76 6f0k:B 961 84 0.2727 0.0187 0.2143 5.6
77 6vbg:B 397 20 0.1212 0.0202 0.4000 5.8 6c9w:A, 4oaa:A, 4oaa:B, 6vbg:A, 2y5y:A, 2y5y:B, 4zyr:A, 4zyr:B
78 2pbz:A 293 23 0.1667 0.0375 0.4783 6.0 2pbz:B, 2pbz:C
79 7bkb:L 79 29 0.1667 0.1392 0.3793 6.4 7bkb:l, 7bkc:L, 7bkc:l
80 7bkb:L 79 31 0.1667 0.1392 0.3548 6.8 7bkb:l, 7bkc:L, 7bkc:l
81 6x6u:B 167 73 0.2727 0.1078 0.2466 6.9 6x1o:B, 6x1o:D, 6x6u:D
82 6cz7:B 234 16 0.1212 0.0342 0.5000 7.2 6cz7:D, 6cz8:D, 6cz8:B, 6cz9:B, 6cz9:D, 6cza:B, 6cza:D
83 8ahx:B 113 53 0.2424 0.1416 0.3019 7.3 8rb8:B, 8rb9:B, 8rbq:B
84 3or1:B 385 19 0.1061 0.0182 0.3684 7.5 3or1:E, 3or2:B, 3or2:E
85 6btm:B 948 20 0.1061 0.0074 0.3500 8.6
86 8vlx:A 2431 32 0.1667 0.0045 0.3438 8.8
87 1bc6:A 77 20 0.1212 0.1039 0.4000 8.9 1bd6:A, 1bqx:A, 1bwe:A
88 7t30:A 666 16 0.1212 0.0120 0.5000 9.7 7t2r:A, 7t2r:F, 7t30:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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