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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
AVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDGTPE
ERLLRAIFG

The query sequence (length=89) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8cwr:B 109 97 1.0000 0.8165 0.9175 1.39e-56 8cwt:B, 8cwt:D, 8cwt:F, 8cyf:B, 7kuf:B
2 6bzo:F 326 76 0.8539 0.2331 1.0000 4.12e-47 6c04:F, 6cce:F, 6ccv:F, 6dcf:F, 6edt:F, 6ee8:F, 6eec:F, 6fbv:F, 8hih:F, 7kif:F, 7kim:F, 7kin:F, 6m7j:F, 6ono:B, 6ono:D, 6onu:B, 6onu:D, 6onu:F, 6onu:H, 7p5x:AF, 5tw1:F, 7u22:F, 5uh5:F, 5uh6:F, 5uh8:F, 5uh9:F, 5uha:F, 5uhb:F, 5uhc:F, 5uhd:F, 5uhe:F, 5uhf:F, 5uhg:F, 5vi5:F, 5vi8:F, 6vvs:F, 6vvt:F, 6vvv:F, 6vvx:F, 6vvy:F, 6vvz:F, 6vw0:F
3 8k60:F 315 76 0.7865 0.2222 0.9211 9.70e-44 8dy7:F, 8dy9:F, 8hvr:F, 8jke:F, 7vpd:F, 7vpz:F, 7x74:F, 7x75:F, 7x76:F
4 7ckq:F 272 75 0.5393 0.1765 0.6400 4.94e-29 7f75:F, 8x6f:E
5 8gzg:F 314 75 0.5056 0.1433 0.6000 4.97e-26 8gzh:F
6 8h3v:G 314 75 0.5056 0.1433 0.6000 2.69e-25 8h40:G
7 7l7b:F 272 73 0.4831 0.1581 0.5890 4.87e-25
8 7rdq:F 349 77 0.4719 0.1203 0.5455 1.37e-19 2a68:F, 2a68:P, 2a69:F, 2a69:P, 6cuu:F, 5d4c:F, 5d4c:P, 5d4d:F, 5d4d:P, 5d4e:F, 5d4e:P, 5e17:F, 5e18:F, 7eh0:F, 7eh1:F, 7eh2:F, 7eh2:P, 4g7h:F, 4g7h:P, 4g7o:F, 4g7o:P, 4g7z:F, 4g7z:P, 5i2d:F, 5i2d:Q, 1iw7:F, 1iw7:P, 4ki2:A, 4ki2:B, 6kqd:F, 6kqd:P, 6kqe:F, 6kqf:F, 6kqg:F, 6kqh:F, 6kql:F, 6kqm:F, 6kqn:F, 1ku7:A, 6l74:F, 6lts:F, 7mlb:F, 7mli:F, 7mlj:F, 3n97:A, 4oin:F, 4oio:F, 4oip:F, 4oiq:F, 4oir:F, 6ovr:F, 6ovy:F, 6ow3:F, 6oy5:F, 6oy6:F, 6oy7:F, 6p70:F, 6p71:F, 4q4z:F, 4q5s:F, 1rio:H, 1smy:F, 5tjg:F, 3ugo:A, 3ugp:A, 5vo8:F, 5voi:F, 8w8n:F, 8w8o:F, 8w8p:F, 6wox:F, 6woy:F, 5x21:F, 5x22:F, 5x22:P, 4xln:F, 4xln:L, 4xlp:F, 4xlp:L, 4xlq:F, 4xlq:L, 4xlr:F, 4xlr:L, 4xls:F, 4xls:L
9 3iyd:F 479 64 0.4157 0.0772 0.5781 5.64e-18
10 6n60:F 318 64 0.4157 0.1164 0.5781 7.41e-18 8igr:L, 8igs:L
11 6psr:L 548 64 0.4157 0.0675 0.5781 9.84e-18 6n58:L, 6n61:F
12 6n4c:F 558 64 0.4157 0.0663 0.5781 9.86e-18 8ad1:F, 6b6h:F, 7bef:F, 7beg:F, 7c17:F, 7c97:F, 6ca0:F, 7chw:F, 7dy6:F, 8ftd:L, 6jnx:F, 8jo2:F, 6k4y:F, 7khb:F, 7khc:F, 7khe:F, 7khi:F, 6ldi:F, 7mkd:L, 7mke:L, 7mki:L, 7mkj:L, 7n4e:F, 6n57:L, 6n62:F, 6oul:L, 6p18:F, 2p7v:B, 6pb4:F, 6pb5:F, 6pb6:F, 6psq:L, 6pss:L, 6pst:L, 6psu:L, 6psv:L, 6psw:L, 7szj:F, 8to1:L, 8to6:L, 8to8:L, 8toe:L, 8tom:L, 5vt0:L, 7vwy:F, 7vwz:F, 7w5w:F, 7w5x:F, 7w5y:F, 6wmu:F, 6xh7:F, 6xh8:F, 6xl5:F, 6xl9:F, 6xlj:F, 6xll:F, 8y6u:F, 4yln:F, 4yln:L, 4yln:R, 4ylo:F, 4ylo:L, 4ylo:R, 4ylp:F, 4ylp:L, 4ylp:R
13 8u3b:F 431 64 0.4157 0.0858 0.5781 1.03e-17
14 4kn7:X 517 64 0.4157 0.0716 0.5781 1.05e-17
15 7ye1:F 497 69 0.4045 0.0724 0.5217 3.83e-16 7ye2:F, 5yix:A
16 6wmr:Z 470 76 0.3933 0.0745 0.4605 8.37e-15 6wmt:Z
17 7ubm:F 353 64 0.3258 0.0822 0.4531 7.62e-12 7ubn:F
18 6ido:A 86 85 0.3933 0.4070 0.4118 7.53e-11 6ido:B
19 7f0r:F 278 60 0.2697 0.0863 0.4000 2.38e-07
20 8hkc:E 262 58 0.2472 0.0840 0.3793 2.13e-06
21 6omf:F 278 69 0.2921 0.0935 0.3768 2.55e-05 5ipl:F, 5ipm:F, 5ipn:F, 6kj6:F, 6utv:FFF, 6utw:FFF, 6utx:FFF, 6uty:FFF, 6utz:FFF, 6uu0:FFF, 6uu1:FFF, 6uu2:FFF, 6uu3:FFF, 6uu4:FFF, 6uu5:FFF, 6uu6:FFF, 6uu7:FFF, 6uu8:FFF, 6uu9:FFF, 6uua:FFF, 6uub:FFF, 6uuc:FFF
22 6pfv:G 223 54 0.2809 0.1121 0.4630 5.51e-05 6pfj:A, 6pfv:A, 6pfv:D
23 7l5s:A 771 52 0.1910 0.0220 0.3269 0.032 7l5i:A
24 6j9e:C 1288 18 0.1461 0.0101 0.7222 0.11
25 7lq4:A 192 62 0.2697 0.1250 0.3871 0.12
26 6pmi:F 239 60 0.2135 0.0795 0.3167 0.38 6pmj:F
27 6vvt:C 883 12 0.1348 0.0136 1.0000 0.45
28 6dcf:C 858 12 0.1348 0.0140 1.0000 0.45
29 8dy7:C 1118 12 0.1348 0.0107 1.0000 0.45 8dy9:C, 8hvr:C, 8jke:C, 8k60:C, 7vpd:C, 7vpz:C, 7x74:C, 7x75:C, 7x76:C
30 6ccv:C 1099 12 0.1348 0.0109 1.0000 0.46 6cce:C, 6kon:C, 5tw1:C, 6vvs:C
31 6jcy:C 1139 12 0.1348 0.0105 1.0000 0.47 6bzo:C, 6c04:C, 6c06:C, 6dv9:C, 6dvb:C, 6dvc:C, 6dvd:C, 6dve:C, 8e74:C, 8e79:C, 8e82:C, 8e8m:C, 8e95:C, 6edt:C, 6ee8:C, 6eec:C, 8ehq:C, 8ej3:C, 8eoe:C, 8eof:C, 8eos:C, 8eot:C, 8exy:C, 6fbv:C, 8hih:C, 6jcx:C, 7kif:C, 7kin:C, 6koo:C, 6kop:C, 6koq:C, 6m7j:C, 7p5x:AC, 7rwi:C, 6tye:C, 6tyf:C, 6tyg:C, 7u22:C, 5uh5:C, 5uh6:C, 5uh8:C, 5uh9:C, 5uha:C, 5uhb:C, 5uhc:C, 5uhd:C, 5uhe:C, 5uhf:C, 5uhg:C, 5vi5:C, 6vvx:C, 6vvy:C, 6vvz:C, 6vw0:C, 5zx2:C
32 8hhl:A 592 29 0.1573 0.0236 0.4828 0.87 8hhm:A
33 5ms0:C 1291 12 0.1236 0.0085 0.9167 0.93
34 8pil:I 1342 12 0.1236 0.0082 0.9167 0.94 8ac0:C, 7adb:X, 7adc:X, 7add:X, 7ade:X, 6b6h:C, 7bef:C, 7beg:C, 6byu:C, 7c17:C, 6c6s:I, 7c97:C, 6ca0:C, 7chw:C, 6cux:C, 7d7d:C, 7dy6:C, 8e3f:A, 8e5k:A, 8e5o:A, 8e6x:A, 8e6z:A, 8eg8:I, 8egb:I, 6flq:C, 8ftd:I, 6gfw:C, 6gh5:C, 6gov:X, 5ipl:C, 5ipm:C, 5ipn:C, 6jnx:C, 8jo2:C, 6k4y:C, 8k58:C, 8k5a:C, 7khb:C, 7khc:C, 7khe:C, 7khi:C, 6kj6:C, 4kmu:C, 4kmu:H, 4kn4:C, 4kn4:H, 4kn7:C, 4kn7:H, 6ldi:C, 7m8e:C, 4mex:C, 4mex:I, 7mkd:I, 7mke:I, 7mki:I, 7mkj:I, 7mkn:C, 6n4c:C, 7n4e:C, 6n57:I, 6n58:I, 6n60:C, 6omf:C, 6oul:I, 6p18:C, 6p19:C, 6pb4:C, 6pb5:C, 6pb6:C, 8pdy:I, 8ph9:I, 6pmi:C, 6pmj:C, 6psq:I, 6psr:I, 6pst:I, 6psu:I, 6psv:I, 6psw:I, 7py0:C, 7py1:C, 7py3:C, 7py5:C, 7py6:C, 7py7:C, 7py8:C, 7pyj:C, 7pyk:C, 7q0j:C, 7q0k:C, 8re4:C, 8rea:C, 8reb:C, 8rec:C, 8red:C, 8ree:C, 7szj:C, 7szk:C, 8to1:I, 8to6:I, 8to8:I, 8toe:I, 8tom:I, 6tqn:X, 6tqo:X, 8u3b:C, 5uac:C, 5uah:C, 5ual:C, 7ubm:C, 7ubn:C, 6utv:CCC, 6utw:CCC, 6utx:CCC, 6uty:CCC, 6utz:CCC, 6uu0:CCC, 6uu1:CCC, 6uu2:CCC, 6uu3:CCC, 6uu4:CCC, 6uu5:CCC, 6uu6:CCC, 6uu7:CCC, 6uu8:CCC, 6uu9:CCC, 6uua:CCC, 6uub:CCC, 6uuc:CCC, 6vjs:C, 5vt0:I, 6vu3:AA, 7vwy:C, 7vwz:C, 6vyq:AA, 6vyr:AA, 6vys:AA, 6vyt:AA, 6vyu:AA, 6vyw:AA, 6vz2:AA, 6vz5:AA, 6vz7:AA, 6vzj:AA, 7w5w:C, 7w5x:C, 7w5y:C, 6wmu:C, 6x6t:AA, 6x7f:AA, 6x7k:AA, 6x9q:AA, 6xas:I, 6xdq:AA, 6xdr:AA, 6xgf:AA, 6xh7:C, 6xh8:C, 6xij:AA, 6xl5:C, 6xl9:C, 6xlj:C, 6xll:C, 6xlm:C, 6xln:C, 4xsx:C, 4xsx:I, 4xsy:C, 4xsy:I, 4xsz:C, 4xsz:I, 7xue:I, 7xui:I, 8y6u:C, 4yfn:I, 4yfx:C, 4yln:C, 4yln:I, 4yln:O, 4ylo:C, 4ylo:I, 4ylo:O, 4ylp:C, 4ylp:I, 4ylp:O, 6z9p:X, 6z9q:X, 6z9r:X, 6z9s:X, 6z9t:X, 4zh2:C, 4zh2:I, 4zh3:C, 4zh3:I, 4zh4:C, 4zh4:I
35 8hio:A 567 29 0.1573 0.0247 0.4828 0.94
36 3iyd:C 1089 12 0.1236 0.0101 0.9167 0.94
37 4s20:C 1179 12 0.1236 0.0093 0.9167 0.95 4s20:H
38 7f0r:C 1324 12 0.1236 0.0083 0.9167 0.96
39 7ye1:C 1312 12 0.1236 0.0084 0.9167 1.1 7ye2:C
40 8bvf:B 403 23 0.1236 0.0273 0.4783 2.0 8bvf:A
41 2a68:C 1119 12 0.1236 0.0098 0.9167 2.0 2a68:M, 2a69:C, 2a69:M, 2a6h:C, 2a6h:M, 3aoh:C, 2be5:C, 2be5:M, 6cuu:C, 5d4c:C, 5d4c:M, 5d4d:C, 5d4d:M, 5d4e:C, 5d4e:M, 3dxj:C, 3dxj:M, 5e17:C, 5e18:C, 7eh0:C, 7eh1:C, 7eh2:C, 7eh2:M, 3eql:C, 3eql:M, 4g7h:C, 4g7h:M, 4g7o:C, 4g7o:M, 4g7z:C, 4g7z:M, 8hsr:I, 5i2d:C, 5i2d:N, 1i6v:C, 1iw7:C, 1iw7:M, 6kqd:C, 6kqd:M, 6kqe:C, 6kqf:C, 6kqg:C, 6kqh:C, 6kql:C, 6kqm:C, 6kqn:C, 6l74:C, 6lts:C, 6m6a:C, 6m6c:C, 7mlb:C, 7mli:C, 7mlj:C, 4mq9:C, 2o5i:C, 2o5i:M, 2o5j:C, 2o5j:M, 4oin:C, 4oio:C, 4oip:C, 4oiq:C, 4oir:C, 6ovr:C, 6ovy:C, 6ow3:C, 6oy5:C, 6oy6:C, 6oy7:C, 6p70:C, 6p71:C, 2ppb:C, 2ppb:M, 4q4z:C, 4q5s:C, 7rdq:C, 1smy:C, 1smy:M, 5tmc:C, 5tmf:C, 5vo8:C, 5voi:C, 8w8n:C, 8w8o:C, 8w8p:C, 6wox:C, 6woy:C, 4wqs:C, 4wqs:M, 5x21:C, 5x22:C, 5x22:M, 4xln:C, 4xln:I, 4xlr:C, 4xlr:I, 1ynj:C, 1ynn:C, 1zyr:C, 1zyr:M
42 8gzh:C 1052 14 0.1236 0.0105 0.7857 2.1 8gzg:C
43 8urw:C 1080 14 0.1236 0.0102 0.7857 2.1 8syi:C
44 3zs6:A 506 30 0.1348 0.0237 0.4000 2.1
45 8h3v:A 1077 14 0.1236 0.0102 0.7857 2.2 8h40:A
46 8p0j:H 382 46 0.1798 0.0419 0.3478 2.4 8p0k:H, 8p0n:H
47 6wmp:C 1196 11 0.1236 0.0092 1.0000 3.0 6wmr:C, 6wmt:C
48 1r9d:A 786 30 0.1461 0.0165 0.4333 5.8 1r9d:B
49 1eu1:A 767 27 0.1011 0.0117 0.3333 6.3
50 8i23:C 1164 12 0.1236 0.0095 0.9167 7.2 8i24:C
51 4cw5:B 438 29 0.1236 0.0251 0.3793 7.7 4cw5:A
52 3j79:R 252 62 0.1910 0.0675 0.2742 7.7 3jbn:AR, 3jbo:AR, 3jbp:AR, 8tpu:AR, 5umd:R
53 2g4o:A 337 37 0.1124 0.0297 0.2703 7.8 2g4o:D
54 7l7b:C 1166 12 0.1236 0.0094 0.9167 8.3
55 7pzb:A 227 24 0.1236 0.0485 0.4583 9.5 7pza:A, 7pza:B, 7pzb:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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