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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AVPKRRKSRSNTRSRRSQWKAAKTELVGVTVAGHAHKVPRRLLKAARLGLIDF

The query sequence (length=53) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7kgb:0 54 53 1.0000 0.9815 1.0000 1.96e-32 7f0d:0, 7msc:0, 7msh:0, 7msm:0, 7msz:0, 7mt2:0, 7mt3:0, 7mt7:0, 7sfr:0, 5v7q:0, 5v93:0
2 5xym:0 55 53 0.7358 0.7091 0.7358 3.20e-21 6dzi:b, 6dzp:b, 8fr8:8, 8kab:b, 5o60:b, 5o61:b, 7s0s:c, 8v9j:4, 8v9k:4, 8v9l:4, 8whx:5, 8why:5, 8wi7:5, 8wi8:5, 8wib:5, 8wic:5, 7xam:b, 8xz3:b, 7y41:b, 5zeb:3, 5zep:z, 5zet:3
3 9c4g:z 62 27 0.3774 0.3226 0.7407 4.55e-07 8crx:z, 8cvm:z
4 5li0:4 56 46 0.2642 0.2500 0.3043 0.18 7asm:Z, 7asn:b, 7aso:g, 7asp:Z, 6ddd:N, 6ddg:N, 6fxc:AZ, 6fxc:BZ, 5hkv:Z, 5hl7:Z, 6hma:Z, 5nd8:4, 5nd9:4, 5ngm:AZ, 7nhl:5, 7nhm:5, 5nrg:Z, 8p2f:5, 8p2g:5, 8p2h:5, 7p48:Z, 6s0x:Z, 6s0z:Z, 6s12:Z, 6s13:Z, 5t7v:LE, 5tcu:LE, 7ttu:N, 7ttw:N, 4wce:Z, 4wf9:Z, 4wfa:Z, 4wfb:Z, 6wqn:N, 6wqq:N, 6wrs:N, 6wru:N, 8y36:Z, 8y37:Z, 8y38:Z, 8y39:Z, 6yef:4
5 7jil:b 59 36 0.2264 0.2034 0.3333 0.38
6 7s1x:B 871 18 0.1698 0.0103 0.5000 3.3 7mxo:A, 7mxo:B, 7n3n:A, 7n3n:B, 7s1x:A, 7s1y:A, 7s1y:B, 7sfl:A, 7sfl:B, 7smp:B, 7smp:A, 8ste:A, 8ste:B, 7zgo:A, 7zgo:B
7 6sj6:4 34 22 0.1887 0.2941 0.4545 7.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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