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BioLiP
>protein
AVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHVGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELHPD
DR

The query sequence (length=82) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1hko:A 104 82 0.9878 0.7788 0.9878 1.08e-56 1aqa:A, 1cyo:A, 1ehb:A, 1es1:A, 1f03:A, 1f04:A, 1i5u:A, 1ib7:A, 1j0q:A, 1jex:A, 1lqx:A, 1lr6:A, 1m20:A, 1m2i:A, 1m2m:A, 1m59:A, 1nx7:A, 1sh4:A, 1u9m:A, 1u9m:B, 1u9m:C, 1u9m:D, 1u9m:E, 1u9m:F, 1u9u:A, 3x32:A, 3x33:A, 3x34:A, 3x35:A
2 2i96:A 108 82 0.9512 0.7222 0.9512 1.12e-54 4hin:A, 4hin:B, 4hin:C, 4hin:D, 2m33:A
3 1aw3:A 94 81 0.9146 0.7979 0.9259 5.37e-52 1axx:A, 2axx:A, 1b5a:A, 1b5b:A, 1bfx:A, 1blv:A, 1do9:A, 1mny:A
4 3ozz:B 82 82 0.8415 0.8415 0.8415 3.28e-49
5 2i89:A 90 81 0.7073 0.6444 0.7160 2.42e-41 2i89:B, 2i89:C, 2i89:D, 1icc:A, 1icc:B, 1icc:D, 1lj0:A, 1lj0:B, 1lj0:C, 1lj0:D, 3mus:B
6 1awp:A 86 81 0.5976 0.5698 0.6049 7.11e-35 1awp:B, 1b5m:A, 1eue:A, 1eue:B, 4hil:A, 4hil:B, 1icc:C, 3mus:A
7 3ner:B 91 81 0.6098 0.5495 0.6173 8.48e-34 3ner:A
8 2ibj:A 86 81 0.5854 0.5581 0.5926 1.73e-30
9 4b8n:B 90 74 0.3659 0.3333 0.4054 2.65e-12 4b8n:A, 4b8n:C, 4b8n:D
10 1cxy:A 81 80 0.3049 0.3086 0.3125 6.82e-11
11 3lf5:A 87 72 0.2927 0.2759 0.3333 9.53e-11 3lf5:B
12 1kbi:A 504 49 0.2683 0.0437 0.4490 1.39e-09 1fcb:A, 1fcb:B, 1kbi:B, 1kbj:A, 1kbj:B, 3ks0:A, 3ks0:B, 1lco:A, 1lco:B, 1ldc:A, 1ltd:A, 1ltd:B, 2oz0:A, 2oz0:B, 1qcw:A, 1qcw:B, 1sze:A, 1sze:B, 1szf:A, 1szf:B, 1szg:A, 1szg:B
13 1x3x:A 82 66 0.3049 0.3049 0.3788 3.89e-09 1x3x:B
14 8tgb:A 108 76 0.2683 0.2037 0.2895 7.04e-09 8tgb:B
15 7bwh:A 88 79 0.2927 0.2727 0.3038 1.16e-08
16 1sox:A 463 81 0.3415 0.0605 0.3457 5.58e-06 2a9a:A, 2a9a:B, 2a9b:A, 2a9c:A, 2a9c:B, 2a9d:A, 2a9d:B, 3hbp:A, 3hbq:A, 1sox:B
17 1mj4:A 79 73 0.2805 0.2911 0.3151 7.27e-05
18 1k6m:A 432 48 0.1463 0.0278 0.2500 2.1 1c7z:A, 1c7z:B, 1c80:A, 1c80:B, 1c81:A, 1fbt:A, 1fbt:B, 1k6m:B, 1tip:A, 1tip:B
19 5lvf:A 142 24 0.1341 0.0775 0.4583 3.9 2l0i:A, 5m9d:A
20 2d2c:D 168 24 0.1341 0.0655 0.4583 4.0 2d2c:Q, 2e74:D, 2e75:D, 2e76:D, 4h0l:D, 4h13:D, 4i7z:D, 4pv1:D, 1vf5:D, 1vf5:Q
21 8dyu:A 2562 29 0.1341 0.0043 0.3793 5.8 8dyv:A
22 8fcy:A 2864 29 0.1341 0.0038 0.3793 6.1 8fd6:A, 8fdt:A
23 8pqw:A 2892 29 0.1341 0.0038 0.3793 6.2 8pqy:A, 8pqz:A, 8pqz:J
24 5nug:A 2920 29 0.1341 0.0038 0.3793 6.3 5nug:B
25 7z8g:A 3047 29 0.1341 0.0036 0.3793 6.8 8fdu:A, 7z8l:f
26 8ptk:f 4502 29 0.1341 0.0024 0.3793 7.9 8ptk:e
27 7unj:A 218 17 0.0976 0.0367 0.4706 8.1 7unj:B
28 7z8f:e 4579 29 0.1341 0.0024 0.3793 8.3 5owo:A, 8pr2:f, 8ptk:m, 8ptk:n, 7z8f:f, 7z8f:m, 7z8f:n, 7z8h:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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