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BioLiP
>protein
AVINHDAVPVWPQPEPADATQALAVRFKPQLDVVNGCQPYPAVDPQGNTSGGLKPAAACRDMSKAQVYSRSGTYNGYYAI
MYSWYMPKDSPSTGIGHRHDWENVVVWLDNAASANIVALSASAHGYKKSFPADKSYLDGITAKISYKSTWPLDHELGFTT
SAGKQQPLIQWEQMTQAARDALESTDFGNANVPFKSNFQDKLVKAFFQ

The query sequence (length=208) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5no9:B 212 212 1.0000 0.9811 0.9811 1.08e-153 3gnz:P, 5nnw:A, 5nnw:B, 5nnw:C, 5nnw:D, 5no9:A, 5no9:C, 5no9:D, 6qbd:A, 6qbd:B
2 3st1:A 212 204 0.4231 0.4151 0.4314 1.62e-46
3 6xyw:Ab 155 51 0.0817 0.1097 0.3333 0.26
4 8c00:t 619 149 0.1538 0.0517 0.2148 0.53 8c01:t, 6rbd:k, 7wtr:CC
5 4wrn:A 693 84 0.0913 0.0274 0.2262 1.1 7pfp:B
6 4wrn:B 663 84 0.0913 0.0287 0.2262 1.3
7 7pfp:A 563 84 0.0913 0.0337 0.2262 1.3 7pfp:C, 7q3n:U
8 7wtp:CC 661 149 0.1538 0.0484 0.2148 2.1 6eml:t, 6wdr:k, 7wtq:CC
9 8cbj:k 670 149 0.1538 0.0478 0.2148 2.5 6fai:k, 6y7c:t
10 7trc:K 330 45 0.0769 0.0485 0.3556 3.3 7bgb:K
11 5na8:A 651 54 0.0721 0.0230 0.2778 6.9 5na6:A, 5na7:A, 5na8:B
12 3x27:D 314 29 0.0433 0.0287 0.3103 7.7 3x27:A, 3x27:B, 3x27:C
13 7nvo:B 282 38 0.0625 0.0461 0.3421 8.4 7nvo:b
14 2hnk:B 232 64 0.0769 0.0690 0.2500 9.2 2hnk:A, 2hnk:C
15 4ifu:A 330 88 0.1202 0.0758 0.2841 9.6 4ifw:A, 4ifx:A, 4ifz:A, 4ig1:A, 7mgt:A, 4xdr:A, 4xdt:A, 4xdu:A
16 7ttn:E 528 38 0.0625 0.0246 0.3421 9.8 8i1u:B, 8i1u:J, 7nvl:B, 7nvl:b, 7nvm:B, 7nvm:b, 7nvn:B, 7nvn:b, 8sfe:b, 8sfe:B, 8sff:B, 8sff:b, 8sg8:B, 8sg8:b, 8sg9:B, 8sg9:b, 8sgc:B, 8sgc:b, 8sgl:B, 8sgl:b, 8sgq:B, 8sgq:b, 8sh9:B, 8sh9:b, 8sha:B, 8sha:b, 8shd:B, 8shd:b, 8she:B, 8she:b, 8shf:B, 8shf:b, 8shg:B, 8shg:b, 8shl:B, 8shl:b, 8shn:B, 8shn:b, 8sho:B, 8sho:b, 8shp:B, 8shp:b, 8shq:B, 8shq:b, 8sht:B, 8sht:b, 7trg:E, 7ttt:E, 7tub:E, 7x0s:B, 7x0s:L, 7x0v:B, 7x0v:L, 7x3j:B, 7x3j:b, 7x3u:b, 7x3u:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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