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BioLiP
>protein
AVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEED
PAHPRYIQTVWGLGYVFVPDGSKALEHHHH

The query sequence (length=110) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6lxn:A 110 110 1.0000 1.0000 1.0000 2.74e-79 6lxn:B
2 4nhj:A 102 98 0.3091 0.3333 0.3469 3.91e-17 4nhj:B
3 2z33:A 104 96 0.2909 0.3077 0.3333 9.32e-12 1gxp:A, 1gxp:B, 1gxp:E, 1gxp:F
4 6cqg:A 98 74 0.2545 0.2857 0.3784 1.22e-11
5 2gwr:A 225 94 0.2909 0.1422 0.3404 2.79e-11 3nhz:B, 3nhz:C, 3nhz:D
6 2oqr:A 226 66 0.2273 0.1106 0.3788 2.96e-09
7 4kny:B 226 97 0.2545 0.1239 0.2887 1.28e-08 4kfc:A, 4kfc:B, 4kny:A, 1zh2:A, 1zh2:B, 1zh4:A, 1zh4:B
8 4b09:A 218 80 0.2455 0.1239 0.3375 9.00e-08 4b09:B, 4b09:C, 4b09:D, 4b09:E, 4b09:F, 4b09:G, 4b09:I, 4b09:K
9 1ys6:B 227 95 0.2818 0.1366 0.3263 9.76e-08 1ys6:A, 1ys7:A, 1ys7:B
10 8hih:O 217 93 0.2545 0.1290 0.3011 4.03e-07 8hih:P, 8hih:N, 8hih:Q
11 5x5l:E 98 72 0.2000 0.2245 0.3056 1.75e-06 5x5l:B, 5x5l:H, 5x5l:A
12 8b4b:W 110 79 0.2182 0.2182 0.3038 2.46e-05 8b4b:X, 8b4b:Z, 8b4b:Y, 8b4c:D, 8b4d:B, 8b4d:C, 8b4d:D, 8b4e:A, 8b4e:B
13 7lza:A 219 81 0.2273 0.1142 0.3086 0.001 7lz9:A
14 8jo2:H 219 98 0.2273 0.1142 0.2551 0.001 8jo2:I, 4s04:A, 4s04:B, 4s04:E, 4s04:F, 4s05:A, 4s05:B, 3w9s:A, 3w9s:B
15 7e1b:A 209 88 0.2182 0.1148 0.2727 0.031 7e1b:B, 7e1b:C, 7e1b:H, 7e1b:D, 7e1b:E, 7e1b:F, 7e1b:G, 7e1h:A, 7e1h:B, 7e1h:E
16 5ju7:A 107 95 0.2273 0.2336 0.2632 0.50
17 6mvg:A 637 48 0.1182 0.0204 0.2708 0.53 6mvg:B, 6mvg:C
18 4wng:A 330 32 0.1182 0.0394 0.4062 1.3 7ep7:A, 4g2v:A, 3ro2:A, 3ro3:A, 4wnd:A, 4wne:A, 4wnf:A
19 1c9k:B 180 39 0.1273 0.0778 0.3590 1.4 1c9k:A, 1c9k:C
20 3mcm:A 368 49 0.1727 0.0516 0.3878 1.6 3mcn:A
21 4o29:A 207 103 0.2364 0.1256 0.2524 1.9
22 3mco:A 397 49 0.1727 0.0479 0.3878 1.9 3mcn:B, 3mco:B
23 8sl9:A 422 49 0.1727 0.0450 0.3878 2.0 4pzv:A
24 2ptf:A 200 51 0.1545 0.0850 0.3333 3.5 2ptf:B
25 5dll:A 854 47 0.1273 0.0164 0.2979 4.8
26 2icp:A 87 79 0.2091 0.2644 0.2911 5.6
27 6s6z:A 1083 25 0.1091 0.0111 0.4800 6.1 6s6z:D, 6s6z:B, 6s6z:H, 6s6z:F, 6s6z:G, 6s6z:E, 6s6z:C, 6sd0:A, 6sd0:B, 6sd0:C, 6sd0:D
28 4zht:A 384 61 0.1909 0.0547 0.3443 7.8 4zht:B, 4zht:C, 4zht:D
29 6yxx:ED 598 61 0.1636 0.0301 0.2951 8.0 7aoi:XC, 6yxy:ED
30 7msk:A 421 21 0.0727 0.0190 0.3810 9.1 7msk:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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