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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AVFADLDLRAGSDLKALRGLVETAAHLGYSVVAINHIVDFKEKKQEIEKPVAVSELFTTLPIVQGKSRPIKILTRLTIIV
SDPSHCNVLRATSSRARLYDVVAVFPKTEKLFHIACTHLDVDLVCITVTEKLPFYFKRPPINVAIDRGLAFELVYSPAIK
DSTMRRYTISSALNLMQICKGKNVIISSAAERPLEIRGPYDVANLGLLFGLSESDAKAAVSTNCRAALLHGETRKT

The query sequence (length=236) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6ahr:J 247 236 1.0000 0.9555 1.0000 9.27e-175 6ahr:I, 6ahu:I, 6ahu:J
2 6agb:J 293 227 0.2797 0.2253 0.2907 1.90e-23 6agb:I, 6ah3:I, 6ah3:J, 7c79:I, 7c79:J, 7c7a:I, 7c7a:J, 6w6v:I, 6w6v:J
3 7cv9:C 351 53 0.0678 0.0456 0.3019 0.46 7cv8:A, 7dpe:A
4 8h6s:A 306 71 0.0805 0.0621 0.2676 0.59 5czc:A, 5czd:A, 7f2r:A, 7f2r:C, 8h6s:B
5 5ne1:B 270 43 0.0636 0.0556 0.3488 2.3 5ne2:A, 5ne2:B, 5ne3:A, 5ne3:B, 6qw7:A, 6qw7:B
6 7qix:P 237 54 0.0847 0.0844 0.3704 3.4 8auv:k, 8b2l:k1, 7qiz:FA, 4v7e:BG
7 7mq8:LR 773 55 0.0678 0.0207 0.2909 3.4 7mq9:LR, 7mqa:LR
8 5h9d:A 318 57 0.0763 0.0566 0.3158 3.6 5h9d:B
9 3zrq:A 382 39 0.0508 0.0314 0.3077 5.1 3zrp:A, 3zrp:B, 3zrq:B, 3zrr:A, 3zrr:B
10 7cv9:A 356 53 0.0678 0.0449 0.3019 6.4 7cv6:B, 7cv7:A, 7cv7:B
11 4j2l:B 123 25 0.0466 0.0894 0.4400 9.2 4j2j:A, 4j2j:B, 4j2j:C, 4j2l:A, 2m41:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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