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BioLiP
>protein
ATYSYTHSVTYVTDNILKSLKDIILLSGLDPEHFADRWESNTRAIKTWLGTGDLRKVILEIYNPATDKLVTRWDIDIVYG
WSDGDGSFWTDTEQLKYAIKKAGLLPSQAKYKLMLDTKPGRPDVEGWSKGSYRSTDGMVKQSLGSTVEHSGLAGQAGYWR
QR

The query sequence (length=162) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6p8u:B 165 162 1.0000 0.9818 1.0000 7.97e-118 6p8s:A, 6p8s:B
2 4pdy:A 332 42 0.0741 0.0361 0.2857 0.045
3 8i9w:CL 397 60 0.0802 0.0327 0.2167 0.51 8i9t:CL, 8i9v:CL, 8i9x:CL, 8i9y:CL, 8i9z:CL, 8ia0:CL, 8pv1:CL, 8pv2:CL, 8pv3:CL, 8pv4:CL, 8pv5:CL, 8pv6:CL, 8pv7:CL, 8pv8:CL, 8pvk:CL, 8pvl:CL
4 7wx5:A 288 57 0.0988 0.0556 0.2807 2.2 7wx6:A, 7wx7:A
5 6ncf:B 676 41 0.0556 0.0133 0.2195 2.4 6ncf:A, 6ncf:C, 6ncf:D, 3o8y:A, 3o8y:B, 7ttk:A, 7ttk:B, 7ttl:A, 7ttl:D, 3v92:B, 3v92:A, 3v98:A, 3v98:B
6 8ebs:J 149 61 0.0988 0.1074 0.2623 2.5 2a4j:A, 8ebt:J, 8ebv:J, 8ebw:J, 8ebx:J, 2ggm:A, 2ggm:B, 2k2i:A, 2obh:A, 2obh:B
7 7ttj:A 643 41 0.0556 0.0140 0.2195 2.5 7ttl:B, 3v99:A
8 3qrx:A 145 44 0.0802 0.0897 0.2955 2.8 1oqp:A
9 5d43:A 150 44 0.0741 0.0800 0.2727 3.1 5d43:B
10 3kf9:A 149 44 0.0802 0.0872 0.2955 4.0 3kf9:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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