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BioLiP
>protein
ATWTCINQQLNPKTNKWEDKRLLYSQAKAESNSHHAPLSDGKTGSSYPHWFTNGYDGNGKLIKGRTPIKFGKADCDRPPK
HSQNGMGKDDHYLLEFPTFPDGHDYKFDSKKPKEDPGPARVIYTYPNKVFCGIVAHQRGNQGDLRLCSH

The query sequence (length=149) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1jbr:A 149 149 1.0000 1.0000 1.0000 6.46e-112 1jbr:B, 1jbs:A, 1jbs:B, 1jbt:A, 1jbt:B
2 3agn:A 114 42 0.1141 0.1491 0.4048 0.72 3ago:A, 3ahw:A, 1rtu:A
3 3mhs:A 455 58 0.1141 0.0374 0.2931 2.5 6aqr:A, 4fip:A, 4fip:E, 4fjc:A, 4fk5:A, 6t9l:K, 4w4u:A, 4wa6:A, 4zux:U, 4zux:Z, 4zux:e, 4zux:j
4 5nkn:A 172 69 0.1275 0.1105 0.2754 5.8 6z6z:A
5 6xa3:A 409 40 0.0671 0.0244 0.2500 6.3 6xa2:A, 6xa2:B, 6xa2:C, 6xa2:D, 6xa2:E, 6xa2:F, 6xa2:G, 6xa2:H
6 7ttp:A 345 53 0.1275 0.0551 0.3585 9.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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