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BioLiP
>protein
ATTLNLSYNGPPDTDKNAVHLFASNLKRLVEEKTDGDIQLKLYPNSMLGEEQERMEQVINTPSLNIASFAGLSPIVPEIY
VSAIPFLFEDYEAAHQFFDEGDYWNKVEDTLEERTGAELLGVIEEGGFLDFTNSKRPISSPEDFEGLRFRAMDPSQVALY
EAFGASGTPIPWTDTYMALKTNVADGQMNPPMYIIMGSLYEVQKYLTLANVQYSDQFLIANGEWYDDLSEENRQAIEAAV
QEASELNREDVEKRVDERIQFLADQGMEVIEPTEDELAAFREKGQPAYIEWLTDEQGIDRAWIEMALEDAGQSDLLANAE
NLYFQ

The query sequence (length=325) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4n8g:A 325 325 1.0000 1.0000 1.0000 0.0 4n8g:B, 4n8g:C, 4n8g:D
2 4ngu:A 317 314 0.5631 0.5773 0.5828 8.82e-139
3 4pdd:A 303 291 0.3015 0.3234 0.3368 8.07e-38 4pdd:B, 4pdd:C
4 7bbr:A 310 268 0.2492 0.2613 0.3022 2.44e-36 7bcn:A, 7bco:A, 7bco:B, 7bcp:A, 7bcr:A
5 3gyy:D 311 289 0.2892 0.3023 0.3253 6.84e-35 3gyy:A, 3gyy:B, 3gyy:C, 2vpn:A, 2vpn:B, 2vpo:A, 2vpo:B
6 4mag:A 307 294 0.2708 0.2866 0.2993 7.26e-35 7a5q:A, 7a5q:B
7 4oan:A 312 288 0.2677 0.2788 0.3021 2.49e-34 4oan:B
8 4xeq:B 304 289 0.2800 0.2993 0.3149 4.79e-34 4xeq:A, 4xeq:C, 4xeq:D
9 4pdh:A 301 283 0.2677 0.2890 0.3074 5.47e-34
10 4pak:A 304 244 0.2400 0.2566 0.3197 6.75e-34 4p9k:A
11 3b50:A 310 292 0.2492 0.2613 0.2774 4.59e-33 2cex:A, 2cex:B, 2cex:C, 2cex:D, 2cey:A, 8cp7:A, 6h75:A, 6h76:A, 2v4c:A, 2wx9:A, 2wyk:A, 2wyp:A, 2xa5:A, 2xwi:A, 2xwk:A, 2xwo:A, 2xwv:A, 2xxk:A
12 3fxb:A 310 271 0.2585 0.2710 0.3100 6.36e-31 3fxb:B
13 4p3l:A 303 273 0.2615 0.2805 0.3114 1.54e-29 4p1l:A, 4p1l:B
14 4mmp:A 308 297 0.2523 0.2662 0.2761 3.24e-29
15 4pf8:A 300 266 0.2400 0.2600 0.2932 1.16e-28 4pf8:B
16 4x8r:A 304 271 0.2615 0.2796 0.3137 7.70e-28 4x8r:B
17 4nq8:B 301 299 0.2708 0.2924 0.2943 1.87e-27 4nq8:A
18 4mnp:A 305 293 0.2554 0.2721 0.2833 1.91e-27
19 7t3e:A 300 262 0.2277 0.2467 0.2824 1.32e-26 7t3e:B
20 4p8b:A 314 272 0.2369 0.2452 0.2831 5.43e-25
21 8te9:B 309 296 0.2462 0.2589 0.2703 9.28e-25 8te9:A
22 4n91:A 308 274 0.2277 0.2403 0.2701 1.52e-23
23 4o8m:A 303 273 0.2277 0.2442 0.2711 6.00e-23 4o8m:B, 4o8m:C, 4o8m:D, 4o8m:E, 4o8m:F, 4o8m:G, 4o8m:H
24 4xfe:A 306 307 0.2369 0.2516 0.2508 3.71e-21
25 4x04:A 301 279 0.2215 0.2392 0.2581 1.02e-20 4x04:B, 4x04:C, 4x04:D
26 4ovt:A 301 293 0.2215 0.2392 0.2457 5.85e-20 4ovt:B
27 4ovq:A 302 254 0.2215 0.2384 0.2835 1.67e-19
28 4nx1:A 308 296 0.2554 0.2695 0.2804 2.74e-19 4nx1:B, 4ovp:A, 4ovp:B
29 4pc9:A 300 260 0.2154 0.2333 0.2692 3.66e-19 4pcd:A
30 4pbq:A 304 272 0.2369 0.2533 0.2831 4.83e-19 4pbq:B, 4pbq:C
31 4mij:A 302 276 0.2185 0.2351 0.2572 3.66e-18 4mhf:A
32 4nhb:B 311 323 0.2646 0.2765 0.2663 4.00e-18 4nhb:A
33 4n8y:A 300 276 0.1938 0.2100 0.2283 1.72e-17 4n8y:B
34 4n15:A 301 281 0.2338 0.2525 0.2705 4.18e-17 4n17:A
35 4ovr:A 298 284 0.2308 0.2517 0.2641 1.28e-15 4ovr:B
36 4pfb:A 308 278 0.2246 0.2370 0.2626 1.47e-14
37 7nra:BBB 328 303 0.2277 0.2256 0.2442 3.55e-11 7nra:AAA
38 4n6k:A 311 161 0.1385 0.1447 0.2795 4.69e-10
39 2pfy:A 301 288 0.2031 0.2193 0.2292 9.80e-10 2pfy:B, 2pfy:C, 2pfy:D
40 4p56:B 317 283 0.1938 0.1987 0.2226 2.18e-09 4p56:A, 4p56:C
41 2zzv:A 330 173 0.1446 0.1424 0.2717 7.94e-08 2zzv:B, 2zzw:A, 2zzw:B, 2zzx:C
42 2pfz:A 301 282 0.1969 0.2126 0.2270 8.80e-08
43 7nqg:AAA 317 290 0.1938 0.1987 0.2172 5.66e-07
44 5i7i:B 320 320 0.2277 0.2313 0.2313 1.34e-06 5i7i:A, 5izz:A
45 4pai:A 308 214 0.1785 0.1883 0.2710 7.67e-06
46 7nrr:AAA 329 291 0.2308 0.2280 0.2577 6.73e-04 7nrr:BBB, 7nsw:AAA, 7nsw:BBB, 7ntd:AAA, 7ntd:BBB, 7nte:A, 7nte:B
47 4pe3:A 315 174 0.1292 0.1333 0.2414 0.003
48 7e9y:A 563 67 0.0677 0.0391 0.3284 0.007
49 4xf5:A 317 53 0.0585 0.0599 0.3585 0.13 4uab:A, 4uab:B, 4xf5:B
50 4pet:A 329 189 0.1354 0.1337 0.2328 0.98 4pet:B
51 3bqk:A 338 121 0.0923 0.0888 0.2479 1.6 3bql:A
52 5c16:A 487 89 0.0677 0.0452 0.2472 1.7 5c16:B, 5c16:C, 5c16:D
53 5yko:A 487 108 0.0892 0.0595 0.2685 1.9 5ykn:A
54 6bs3:B 355 35 0.0369 0.0338 0.3429 3.1 6bs4:B
55 1o9j:A 494 52 0.0492 0.0324 0.3077 3.9 1o9j:B, 1o9j:C, 1o9j:D
56 4mnc:A 305 212 0.1754 0.1869 0.2689 4.0 4mni:A
57 5eom:J 286 67 0.0554 0.0629 0.2687 4.3
58 1nyq:B 645 46 0.0554 0.0279 0.3913 4.4 1nyq:A, 1nyr:A, 1nyr:B
59 5w3p:H 215 60 0.0492 0.0744 0.2667 4.9
60 2d73:A 717 63 0.0369 0.0167 0.1905 6.7 2d73:B, 2jka:A, 2jka:B, 2jke:A, 2jke:B, 2jkp:A, 2jkp:B, 3wfa:A, 3wfa:B, 2zq0:A, 2zq0:B
61 3nyn:A 553 55 0.0431 0.0253 0.2545 7.2 2acx:A, 2acx:B, 3nyn:B, 3nyo:A, 3nyo:B
62 7roq:A 1831 57 0.0462 0.0082 0.2632 8.2
63 7cyy:C 497 127 0.0954 0.0624 0.2441 8.7 7cx7:A, 7cx7:B, 7cx7:C, 7cx7:D, 7cx7:E, 7cx7:F, 7cyy:A, 7cyy:B, 7cyy:D, 7cyy:E, 7cyy:F
64 5x71:A 796 65 0.0646 0.0264 0.3231 9.8 5x6y:A, 5x6y:C, 5x6z:C, 5x6z:A, 5x6z:D, 5x6z:B, 5x70:A, 5x70:B, 5x71:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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