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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ATNYIYTPLNQLKGGTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTNVKLTCLLFSGNYEALPIIYKNGDIVRFHRLK
IQVYKKETQGITSSGFASLTFEGTLGAPIIPRTSSKYFNFTTEDHKMVEALRVWASTHMSPSWTLLKLCDVQPMQYFDLT
CQLLGKAEVDGASFLLKVWDGTRTPFPSWRVLIQDLVLEGDLSHIHRLQNLTIDILVYDNHVHVARSLKVGSFLRIYSLH
TKLQSMNSENQTMLSLEFHLHGGTSYGRGIRVLPESNSDVDQLKKDLESANLT

The query sequence (length=293) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8sok:D 630 293 0.9898 0.4603 0.9898 0.0 5h65:A, 3kjo:A, 3kjp:A, 7s1o:A, 7s1o:B, 7s1t:A, 7s1t:D, 7s1t:G, 7s1t:J, 7s1u:A, 7s1u:B, 8sh0:A, 8sh1:A, 8soj:D, 5un7:A, 1xjv:A
2 7qxb:P 251 293 0.8532 0.9960 0.8532 1.29e-176 7qxs:P
3 7cuh:A 305 301 0.2526 0.2426 0.2458 1.18e-06 4hid:A, 4hik:A, 4him:A, 4hio:A, 4hj5:A, 4hj7:A, 4hj8:A, 4hj9:A, 4hja:A, 5usb:A, 5usn:A, 5uso:A
4 6bwy:B 346 90 0.1058 0.0896 0.3444 2.04e-06 6bwy:A, 6bwy:G, 6bwy:E, 1qzg:A, 1qzg:B, 1qzh:A, 1qzh:B, 1qzh:F, 1qzh:C, 1qzh:D, 1qzh:E
5 2i0q:A 461 200 0.1706 0.1085 0.2500 2.21e-06 1jb7:A, 1k8g:A, 1k8g:B, 1kix:A, 1otc:A, 1pa6:A, 1ph1:A, 1ph2:A, 1ph3:A, 1ph4:A, 1ph5:A, 1ph6:A, 1ph7:A, 1ph8:A, 1ph9:A, 1phj:A
6 7po4:E 284 92 0.0887 0.0915 0.2826 5.5 7qh6:E
7 7dmk:A 732 99 0.0785 0.0314 0.2323 9.5 7dmk:B, 7dmk:C, 7dmk:D
8 6wmr:Z 470 89 0.0819 0.0511 0.2697 9.8 6wmt:Z

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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