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BioLiP
>protein
ASVVIRNLSEATHNAIKFRARAAGRSTEAEIRLILDNIAKAQQTVRLGSMLASIGQEIGGVELE

The query sequence (length=64) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2bsq:E 68 64 1.0000 0.9412 1.0000 9.18e-40 2bsq:F, 2bsq:G, 2bsq:H, 2h1o:E, 2h1o:F, 2h1o:G, 2h1o:H
2 4iok:A 557 37 0.2500 0.0287 0.4324 6.3 1fp7:A, 1fpm:A, 1fpm:B, 4iok:B, 4iol:A, 4iol:B, 4jjz:A, 4jjz:B, 4jki:A, 3qus:A, 3qus:B
3 1vs0:B 305 37 0.2188 0.0459 0.3784 6.7 6nhx:A, 6nhz:A, 1vs0:A
4 3b2d:A 601 55 0.2656 0.0283 0.3091 6.8 3b2d:B
5 3ca1:A 257 57 0.2812 0.0700 0.3158 7.0 3ca4:A, 3ca5:A, 3cah:A
6 6iey:A 307 26 0.1562 0.0326 0.3846 7.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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