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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIE
GQLRTRKWTDQSGQDRYTTEVVVNVGGTMQML

The query sequence (length=112) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1eqq:B 120 112 1.0000 0.9333 1.0000 1.17e-79 1eqq:A, 1eyg:A, 1eyg:B, 1eyg:C, 1eyg:D
2 6irq:C 104 110 0.7143 0.7692 0.7273 1.32e-53 6irq:A, 6irq:B, 6irq:D, 6jdg:C, 6jdg:A, 6jdg:B, 6jdg:D, 7vum:A, 7vum:C, 5yun:B, 5yun:A, 5yun:D
3 5odn:D 106 100 0.4911 0.5189 0.5500 7.43e-35 5odn:F, 5odn:G, 5odn:B, 5odn:C, 5odn:A, 5odn:E, 5odn:H
4 5odp:G 100 84 0.4286 0.4800 0.5714 4.93e-30 5odp:A
5 3ulp:C 116 102 0.3571 0.3448 0.3922 3.51e-29 3ulp:A, 3ulp:B, 3ulp:D
6 2vw9:A 108 90 0.3661 0.3796 0.4556 9.83e-22 2vw9:B
7 6bhx:C 102 100 0.3482 0.3824 0.3900 1.28e-19 6bhx:A, 6bhx:B
8 6rup:A 111 103 0.3214 0.3243 0.3495 9.70e-19 6rup:B, 8uzt:A, 8uzt:C, 8uzt:D
9 3a5u:A 118 102 0.3393 0.3220 0.3725 3.49e-16 3a5u:B
10 8gw5:A 99 100 0.3036 0.3434 0.3400 7.03e-16 7ym1:A
11 7dep:B 102 100 0.3482 0.3824 0.3900 1.05e-15
12 8uzt:B 100 82 0.2857 0.3200 0.3902 2.20e-15
13 3vdy:A 101 99 0.3304 0.3663 0.3737 1.17e-14 3vdy:B
14 3udg:C 214 82 0.2857 0.1495 0.3902 2.25e-11 3udg:B, 3udg:A
15 3udg:C 214 100 0.3482 0.1822 0.3900 3.40e-11 3udg:B, 3udg:A
16 8t2s:D 389 41 0.1429 0.0411 0.3902 0.94 8t2r:D, 8t2t:D, 7uim:D, 7uin:D
17 1jju:B 337 46 0.1607 0.0534 0.3913 1.0 1pby:B
18 6ktv:A 431 48 0.1161 0.0302 0.2708 9.3 6h98:A, 6h99:A, 6h9a:A, 6ktw:A, 6ktx:A, 6ktz:A, 6ku1:A, 6ku1:B, 6ku2:A, 6ku2:E, 6kvw:A, 6kvw:B, 6kvy:A, 6kvz:A, 6kw0:A, 6kw0:B
19 7y5g:B 302 58 0.1071 0.0397 0.2069 10.0 7y5g:A, 7y5h:B, 7y5h:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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