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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ASQITIQARLISFESNRQQLWKLMADLNTPLINELLCQLGQHPDFEKWQQKGKLPSTVVSQLCQPLKTDPRFAGQPSRLY
MSAIHIVDYIYKSWLAIQKRLQQQLDGKTRWLEMLNSDAELVELSGDTLEAIRVKAAEILAILSKTLFDAYQETEDIKSR
SAISYLLKNGCKLTDKEEDSEKFAKRRRQVEIQIQRLTEKLSLPFPLVFETNEDMVWSKNQKGRLCVHFNGLSDLIFEVY
CGNRQLHWFQRFLEDQQTKRKSKNQHSSGLFTLRNGHLVWLEGEGKGEPWNLHHLTLYCCVDNRLWTEEGTEIVRQEKAD
EITKFITNMKKKSDLSDTQQALIQRKQSTLTRINNSFERPSQPLYQGQSHILVGVSLGLEKPATVAVVDAIANKVLAYRS
IKQLLGDNYELLNRQRRQQQYLSHERHKAQKNFSPNQFGASELGQHIDRLLAKAIVALARTYKAGSIVLPKLGDMREVVQ
SEIQAIAEQKFPGYIEGQQKYAKQYRVNVHRWSYGRLIQSIQSKAAQTGIVIEEGKQPIRGSPHDKAKELALSAYNLRLT

The query sequence (length=560) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8bd6:A 560 560 1.0000 1.0000 1.0000 0.0
2 8bd5:A 605 605 1.0000 0.9256 0.9256 0.0 8ea3:O, 8ea4:O, 8rdu:A, 8rkt:A
3 8axa:A 465 371 0.6482 0.7806 0.9784 0.0 7n3o:A, 7n3p:A, 7pla:A
4 8axa:A 465 100 0.1768 0.2129 0.9900 6.07e-62 7n3o:A, 7n3p:A, 7pla:A
5 8axb:A 430 359 0.5964 0.7767 0.9304 0.0
6 8axb:A 430 95 0.1696 0.2209 1.0000 5.46e-60
7 3jd5:c 168 42 0.0268 0.0893 0.3571 0.49 6neq:c, 6nf8:c
8 5u5g:A 286 129 0.0607 0.1189 0.2636 1.9 5u5g:B, 5u5g:C, 5u5g:D
9 5exc:E 59 16 0.0179 0.1695 0.6250 2.0 5exc:F, 5exc:G, 5exc:H
10 6eqo:A 1804 38 0.0286 0.0089 0.4211 3.5 6eqo:B
11 8gxv:A 353 78 0.0446 0.0708 0.3205 3.6
12 5kpv:33 675 109 0.0518 0.0430 0.2661 4.5 5kps:A, 5kpw:33, 5kpx:33

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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