Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ASGESLVGSRIKVWWPMDQAYYKGVVESYDAAKKKHLVIYDDGDQEILYLKNQKWSPL

The query sequence (length=58) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7de9:A 58 58 1.0000 1.0000 1.0000 1.05e-37
2 7aih:Ax 167 49 0.2241 0.0778 0.2653 1.2 7am2:Ax, 7ane:Ax
3 2v17:H 222 38 0.2241 0.0586 0.3421 1.2
4 8k7p:A 382 26 0.1897 0.0288 0.4231 2.6 8k7p:B, 8k7q:A, 8k7q:B, 6ksi:A, 6ksi:B, 6ksl:A, 6ksl:B, 6ksm:A, 6ksm:B, 8s9r:A, 8s9r:B, 8yib:A, 8yib:B
5 3sfv:A 179 37 0.1724 0.0559 0.2703 2.9 8alk:B, 7eq2:A, 7eq2:B, 4fmb:B, 4fmb:D, 4fmb:F, 4fmc:B, 4fmc:D, 4fmd:B, 4fmd:D, 4fmd:F, 4fme:B, 4fme:E, 2fol:A, 4hlq:B, 4hlq:D, 4hlq:F, 4hlq:H, 4hlq:J, 4i1o:A, 4i1o:C, 4i1o:E, 4i1o:G, 4iru:B, 4iru:D, 4iru:F, 4jvs:B, 3nkv:A, 3nkv:B, 5o74:B, 5o74:D, 5o74:F, 5o74:H, 5o74:J, 5o74:L, 6sku:B, 5szh:B, 5szk:B, 3tkl:A
6 8jp0:A 719 33 0.1897 0.0153 0.3333 3.2
7 8sgi:A 751 33 0.1897 0.0146 0.3333 3.2 2dpk:A, 3gin:A, 3gin:B, 8sgj:A
8 1q9o:B 226 29 0.2069 0.0531 0.4138 3.3 2bmk:B, 2bmk:H, 2g5b:B, 2g5b:D, 2g5b:F, 2g5b:H, 3hzy:B, 1kel:H, 3okl:B, 1q9o:D, 2r1w:B, 2r23:B, 2r2e:B, 3t65:B, 1wc7:B, 1wc7:H, 1wcb:B, 1wcb:H
9 3ijh:B 221 29 0.2069 0.0543 0.4138 3.4 3ijh:D, 3ijs:B, 3ijs:D, 3ijy:B, 3ijy:D, 3ikc:B, 3ikc:D
10 2cju:H 121 29 0.1897 0.0909 0.3793 3.6 2uud:H, 2uud:J
11 3omc:A 217 32 0.1724 0.0461 0.3125 3.9 5m9o:A, 3omc:B, 3omg:A, 3omg:B
12 2m0o:A 79 60 0.2759 0.2025 0.2667 4.6
13 1ukv:Y 197 37 0.1552 0.0457 0.2432 4.8 2bcg:Y, 1yzn:A
14 2fna:A 352 55 0.2414 0.0398 0.2545 6.8 2fna:B
15 6c71:B 440 32 0.2241 0.0295 0.4062 7.5 7c49:A, 7c49:B, 7c4a:A, 7c4a:B, 6c71:A, 6c71:C, 6c71:D, 8dq7:A, 8dq7:B, 8dq8:A, 8dq8:B, 8dsv:A, 8dsv:B, 7khn:A, 7kho:A, 7kho:B, 7kho:C, 5ttj:A, 5ttj:B, 5ttk:A, 5ttk:B, 5ttk:C, 5ttk:D
16 4hxg:F 614 31 0.1897 0.0179 0.3548 7.5 4hxe:B, 4hxf:B, 4hxg:A, 4hxg:B, 4hxg:C, 4hxg:D, 4hxg:E, 4hxg:G, 4hxg:H, 4hxg:I, 4hxg:L
17 1wte:A 272 21 0.1724 0.0368 0.4762 7.6 1wte:B
18 2jes:A 370 35 0.1724 0.0270 0.2857 7.8 2jes:C, 2jes:E, 2jes:G, 2jes:I, 2jes:K, 2jes:M, 2jes:O, 2jes:Q, 2jes:S, 2jes:U, 2jes:W, 2jes:Y
19 1tmx:A 292 41 0.2069 0.0411 0.2927 8.1 1tmx:B
20 8egk:B 355 38 0.1897 0.0310 0.2895 8.6
21 7kho:D 405 32 0.2241 0.0321 0.4062 8.6
22 6kki:A 366 27 0.1552 0.0246 0.3333 9.1

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218