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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
ASGAGKAIGVLTSGGDAQGMNAAVRAVTRMGIYVGAKVFLIYEGYEGLVEGGENIKQANWLSVSNIIQLGGTIIGSARCK
AFTTREGRRAAAYNLVQHGITNLCVIGGDGSLTGANIFRSEWGSLLEELVAEGKISETTARTYSHLNIAGLVGSIDNDFC
GTDMTIGTDSALHRIMEVIDAITTTAQSHQRTFVLEVMGRHCGYLALVSALASGADWLFIPEAPPEDGWENFMCERLGET
RSRGSRLNIIIIAEGAIDRNGKPISSSYVKDLVVQRLGFDTRVTVLGHVQRGGTPSAFDRILSSKMGMEAVMALLEATPD
TPACVVTLSGNQSVRLPLMECVQMTKEVQKAMDDKRFDEATQLRGGSFENNWNIYKLLAHQKPPKEKSNFSLAILNVGAP
AAGMNAAVRSAVRTGISHGHTVYVVHDGFEGLAKGQVQEVGWHDVAGWLGRGGSMLGTKRTLPKGQLESIVENIRIYGIH
ALLVVGGFEAYEGVLQLVEARGRYEELCIVMCVIPATISNNVPGTDFSLGSDTAVNAAMESCDRIKQSASGTKRRVFIVE
TMGGYCGYLATVTGIAVGADAAYVFEDPFNIHDLKVNVEHMTEKMKTDIQRGLVLRNEKCHDYYTTEFLYNLYSSEGKGV
FDCRTNVLGHLQQGGAPTPFDRNYGTKLGVKAMLWLSEKLREVYRKGRVFANAPDSACVIGLKKKAVAFSPVTELKKDTD
FEHRMPREQWWLSLRLMLKMLAQY

The query sequence (length=744) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8w2h:A 761 744 1.0000 0.9777 1.0000 0.0 7lw1:A, 7lw1:D, 7lw1:E, 7lw1:F, 8w2g:A, 8w2g:B, 8w2g:D, 8w2g:C, 8w2h:B, 8w2h:C, 8w2h:D, 8w2j:E, 8w2j:F, 8w2j:G, 8w2j:H, 8w2j:A, 8w2j:B, 8w2j:C, 8w2j:D
2 3o8l:A 748 743 0.7083 0.7045 0.7093 0.0 3o8l:B, 3o8n:A, 3o8n:B
3 4xyj:A 768 745 0.6949 0.6732 0.6940 0.0 4rh3:A, 4rh3:B, 4rh3:C, 4rh3:D, 4u1r:A, 4u1r:B, 4u1r:C, 4u1r:D, 4wl0:A, 4wl0:B, 4wl0:C, 4wl0:D, 4xyj:B, 4xyj:C, 4xyj:D, 4xyj:E, 4xyj:F, 4xyj:G, 4xyj:H, 4xyk:A, 4xyk:B, 4xyk:C, 4xyk:D, 4xz2:A, 4xz2:B, 4xz2:C, 4xz2:D
4 3o8o:B 763 757 0.4556 0.4443 0.4478 0.0 3o8o:D, 3o8o:F, 3o8o:H
5 3opy:B 884 757 0.4570 0.3846 0.4491 0.0 3opy:D, 3opy:F, 3opy:H
6 3opy:B 884 310 0.1237 0.1041 0.2968 7.20e-31 3opy:D, 3opy:F, 3opy:H
7 3o8o:E 752 737 0.4395 0.4348 0.4437 0.0 3o8o:A, 3o8o:C, 3o8o:G
8 4i4i:A 319 350 0.2043 0.4765 0.4343 4.86e-74 4i4i:B, 4i4i:C, 4i4i:D, 4i7e:A, 4i7e:B, 4i7e:C, 4i7e:D, 1mto:A, 1mto:B, 1mto:C, 1mto:D, 1mto:E, 1mto:F, 1mto:G, 1mto:H, 3pfk:A, 4pfk:A, 6pfk:A, 6pfk:B, 6pfk:C, 6pfk:D
9 4i4i:A 319 292 0.1317 0.3072 0.3356 2.13e-43 4i4i:B, 4i4i:C, 4i4i:D, 4i7e:A, 4i7e:B, 4i7e:C, 4i7e:D, 1mto:A, 1mto:B, 1mto:C, 1mto:D, 1mto:E, 1mto:F, 1mto:G, 1mto:H, 3pfk:A, 4pfk:A, 6pfk:A, 6pfk:B, 6pfk:C, 6pfk:D
10 5xz7:A 322 311 0.1707 0.3944 0.4084 1.74e-63 5xz6:A, 5xz8:A, 5xz9:A, 5xza:A
11 5xz7:A 322 295 0.1344 0.3106 0.3390 3.03e-39 5xz6:A, 5xz8:A, 5xz9:A, 5xza:A
12 1pfk:A 320 310 0.1720 0.4000 0.4129 1.64e-56 1pfk:B
13 1pfk:A 320 290 0.1263 0.2938 0.3241 4.03e-39 1pfk:B
14 6qu3:A 464 368 0.1250 0.2004 0.2527 5.01e-14 3f5m:A, 3f5m:B, 3f5m:C, 3f5m:D, 6qu3:B, 6qu3:C, 6qu3:D, 6qu4:A, 6qu4:B, 6qu4:C, 6qu4:D, 6qu5:A, 6qu5:B, 6sy7:A, 6sy7:B, 6sy7:C, 6sy7:D, 6sy7:E, 6sy7:F, 6sy7:G, 6sy7:H
15 6qu3:A 464 213 0.0726 0.1164 0.2535 5.06e-06 3f5m:A, 3f5m:B, 3f5m:C, 3f5m:D, 6qu3:B, 6qu3:C, 6qu3:D, 6qu4:A, 6qu4:B, 6qu4:C, 6qu4:D, 6qu5:A, 6qu5:B, 6sy7:A, 6sy7:B, 6sy7:C, 6sy7:D, 6sy7:E, 6sy7:F, 6sy7:G, 6sy7:H
16 2f48:B 552 263 0.0820 0.1105 0.2319 1.89e-04 2f48:A, 1kzh:A
17 1kzh:B 530 263 0.0820 0.1151 0.2319 1.92e-04
18 3o93:A 190 38 0.0175 0.0684 0.3421 4.0 3o90:A, 3o90:B, 3o90:C, 3o90:D, 3o91:A, 3o91:B, 3o91:C, 3o91:D, 3o92:A, 3o92:B, 3o92:C, 3o92:D, 3o93:B, 3o93:C, 3o93:D, 3o94:A, 3o94:B, 3o94:C, 3o94:D
19 3ke6:A 354 41 0.0202 0.0424 0.3659 4.3 3ke6:B
20 7x5j:C 256 66 0.0282 0.0820 0.3182 4.8 7x5j:D, 7x5j:A, 7x5j:E, 7x5j:B, 7x5j:F
21 2ndo:A 189 87 0.0309 0.1217 0.2644 7.5 6bqx:A, 6br4:A, 6br4:B, 8cxd:A, 8cxd:B, 8czm:A, 8czm:B, 8czn:A, 8czn:B, 8d10:A, 8d10:B, 8d11:A, 8d11:B, 8d12:A, 8d12:B, 8dg1:B, 8dg2:B, 3dks:B, 3dks:C, 3dks:A, 3dks:D, 8dn0:A, 8dn0:B, 8eoc:B, 8eqo:B, 7l76:A, 7l76:B, 7l7c:A, 7l7c:B, 7lhp:A, 7lhp:B, 7lsm:A, 6pbi:A, 6pc9:A, 6pd7:A, 6pdh:A, 6pg1:A, 6pg1:B, 6pg2:A, 6pg2:B, 6pgj:A, 6pgj:B, 6piq:A, 6piq:B, 6pli:A, 6pli:B, 6pmf:A, 6pmf:B, 6pml:A, 6pml:B, 6poh:A, 6poh:B, 6poi:A, 6poi:B, 6poq:A, 6poq:B, 6pvy:A, 6pvy:B, 6pvz:A, 6pvz:B, 7s1c:A, 7s1c:B, 7s1d:A, 7s1d:B, 7s1f:A, 7s1f:B, 7s1l:A, 7s1l:B, 4tky:B, 4tky:A, 4tky:C, 4tky:D, 7ttv:A, 7ttv:B, 8u1y:A, 8u1y:B, 8u59:A, 8u59:B, 8ubq:A, 8ubq:B, 4wet:A, 4wey:A, 4wf4:B, 4wf5:A, 4wf5:B, 6whd:A, 6whd:B, 6xsp:A, 6xsp:B, 6xsq:A, 6xsq:B, 6xt3:A, 6xt3:B, 4zij:A, 4zij:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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