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BioLiP
>protein
ARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILDVRERQEQQEQEAAELQ
AVTAIAEGRR

The query sequence (length=90) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4jk1:E 90 90 1.0000 1.0000 1.0000 2.96e-58 8fvw:H, 4jk2:E, 4jkr:E, 4jkr:K, 7khe:E, 7khi:E, 8upr:AF, 8uql:AF, 8uqp:AF, 8urh:AF, 5vsw:E, 5vsw:K
2 6wmt:E 69 63 0.3111 0.4058 0.4444 2.11e-09
3 5vzt:B 418 64 0.2556 0.0550 0.3594 0.21 5vzt:D, 5vzu:B, 5vzu:D
4 7w5c:A 355 46 0.1667 0.0423 0.3261 1.6
5 2wyh:A 905 24 0.1222 0.0122 0.4583 2.3 2wyh:B, 2wyi:A, 2wyi:B
6 4ic7:A 355 65 0.2222 0.0563 0.3077 5.5 4b99:A, 5byy:A, 5byz:A, 6hkm:A, 6hkn:A, 4ic7:D, 5o7i:A, 7pus:AAA, 4zsg:A, 4zsj:A, 4zsl:A
7 1wsv:A 371 22 0.1222 0.0296 0.5000 6.5 1wsv:B
8 7tm7:A 802 34 0.1222 0.0137 0.3235 6.5 7tm7:B
9 5ahk:A 555 47 0.1556 0.0252 0.2979 9.3 5ahk:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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