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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ARPCIPKSFGYSSVVCVCNATYCDSFDPPTFPALGTFSRYESTRSGRRMELSMGPIQANHTGTGLLLTLQPEQKFQKVKG
FGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGYNIIRVPMASCDFSIRTYTYADTPDDFQLHNFSLPEEDTKLKIPL
IHRALQLAQRPVSLLASPWTSPTWLKTNGAVNGKGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEPSAGL
LSGYPFQCLGFTPEHQRDFIARDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPA
KATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVVGWTDWNLALNPEGGPNWVRNFVDS
PIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVGLVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFL
ETISPGYSIHTYLWRRQ

The query sequence (length=497) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 9fa6:A 501 497 1.0000 0.9920 1.0000 0.0 8awk:AAA, 8awr:AAA, 8ax3:A, 8ax3:B, 9f9z:A, 9fa3:A, 9fad:A, 9fal:A, 9fay:A, 9faz:A, 9fb2:A, 9fdi:A, 3gxf:B, 3gxf:D, 5lvx:C, 5lvx:B, 5lvx:A, 5lvx:D, 6moz:A, 2nsx:A, 2nsx:B, 2nsx:C, 2nsx:D, 2nt0:A, 2nt0:B, 2nt0:C, 2nt0:D, 7nwv:AAA, 7nwv:BBB, 8p3e:B, 8p41:A, 8p41:B, 6q1n:A, 6q1n:B, 6q1p:A, 6q1p:B, 6q6k:A, 6q6k:B, 6q6l:A, 6q6l:B, 6q6n:A, 6q6n:B, 3rik:B, 3rik:D, 3ril:A, 3ril:B, 3ril:C, 3ril:D, 6t13:B, 6t13:C, 6t13:A, 6t13:D, 6tjq:BBB, 6tn1:AAA, 2v3d:A, 2v3d:B, 2v3e:A, 2v3e:B, 2vt0:A, 2vt0:B, 2wcg:A, 2wcg:B, 2xwd:A, 2xwd:B, 2xwe:A, 2xwe:B, 1y7v:A, 1y7v:B, 6ytp:AAA, 6ytp:BBB, 6ytr:AAA, 6ytr:BBB, 6yut:AAA, 6yut:BBB, 6yv3:AAA, 6yv3:BBB, 6z39:AAA, 6z39:BBB, 6z3i:BBB
2 2wnw:B 445 432 0.2676 0.2989 0.3079 1.06e-62 2wnw:A
3 5ngl:B 454 453 0.2354 0.2577 0.2583 5.73e-46 5ngl:A, 5ngl:C
4 7n6o:A 433 423 0.2032 0.2333 0.2388 6.04e-12 7n6o:B
5 6krn:A 456 435 0.1932 0.2105 0.2207 1.31e-11
6 6m5z:A 433 436 0.1851 0.2125 0.2110 1.22e-06 6m5z:B
7 8cbc:A 455 228 0.1167 0.1275 0.2544 1.25e-06 8c48:A, 8c48:B, 8cbc:B, 7o0e:A, 7o0e:G, 8p67:A, 8p67:B
8 8cbc:A 455 70 0.0423 0.0462 0.3000 0.010 8c48:A, 8c48:B, 8cbc:B, 7o0e:A, 7o0e:G, 8p67:A, 8p67:B
9 8idp:A 446 411 0.1771 0.1973 0.2141 1.32e-05 8idp:C, 8idp:B, 8idp:D, 8idq:A, 8idq:B, 8idq:C, 8idq:D
10 2y24:A 383 431 0.1690 0.2193 0.1949 2.06e-05
11 3kl0:A 397 299 0.1167 0.1461 0.1940 0.015 3kl3:A, 3kl3:B, 3kl5:A, 3kl5:B, 3kl5:C
12 4qaw:A 537 313 0.1268 0.1173 0.2013 0.061 4qaw:B, 4qaw:C, 4qaw:D, 4qaw:E, 4qaw:F, 4qaw:G, 4qaw:H, 4qb1:A, 4qb2:A, 4qb6:A
13 4uqa:A 391 332 0.1308 0.1662 0.1958 0.079 5a6l:A, 5a6m:A, 4ckq:A, 4uqc:A
14 1htt:A 366 73 0.0443 0.0601 0.3014 0.58 1htt:B, 1htt:C, 1htt:D, 1kmm:B, 1kmm:D, 1kmn:B, 1kmn:D
15 1kmm:C 387 73 0.0443 0.0568 0.3014 0.59 2el9:A, 2el9:B, 2el9:C, 2el9:D, 1kmm:A, 1kmn:A, 1kmn:C
16 4e51:A 415 116 0.0624 0.0747 0.2672 1.8 4e51:B
17 1oyw:A 516 76 0.0543 0.0523 0.3553 2.8 1oyy:A
18 5e3i:B 398 113 0.0584 0.0729 0.2566 4.0 5e3i:A
19 6qmu:A 184 78 0.0463 0.1250 0.2949 6.2 3by0:A, 3by0:B, 3by0:C, 3cbc:A, 3cbc:B, 3cbc:C, 3cmp:A, 3cmp:B, 3cmp:C, 1dfv:A, 1dfv:B, 3fw4:A, 3fw4:C, 3fw5:A, 3fw5:B, 3fw5:C, 3hwe:A, 3hwe:B, 3hwe:C, 3hwf:A, 3hwf:B, 3hwf:C, 3hwg:A, 3hwg:B, 3hwg:C, 3i0a:A, 3i0a:B, 3i0a:C, 4k19:A, 4k19:B, 4k19:C, 3k3l:A, 3k3l:C, 5khp:A, 5khp:B, 5khp:C, 5kic:A, 5kic:B, 5kic:C, 5kid:A, 5kid:B, 5kid:C, 1l6m:A, 1l6m:B, 1l6m:C, 4mvi:A, 4mvk:A, 4mvl:A, 4mvl:B, 4mvl:C, 4mvl:D, 3pec:C, 3ped:A, 3ped:B, 3ped:C, 6qmu:B, 3t1d:A, 3t1d:B, 3t1d:C, 3tf6:A, 3tf6:B, 3tf6:C, 3tzs:A, 3tzs:B, 3tzs:C, 3u0d:A, 3u0d:B, 3u0d:C, 3u0d:D, 8uyn:A, 8uyn:B, 8uyn:C, 8uz9:A, 8uz9:B, 8uz9:C, 1x71:A, 1x71:B, 1x71:C, 1x89:A, 1x89:B, 1x89:C, 1x8u:A, 1x8u:B, 1x8u:C, 4zfx:A, 4zfx:C, 4zhc:A, 4zhc:B, 4zhc:C, 4zhd:A, 4zhd:B, 4zhd:C, 4zhf:A, 4zhf:B, 4zhf:C, 4zhf:D, 4zhf:E, 4zhf:F, 4zhg:A, 4zhg:B, 4zhg:C, 4zhg:D, 4zhg:E, 4zhg:F, 4zhh:A, 4zhh:B, 4zhh:C, 4zhh:D, 4zhh:E, 4zhh:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218