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BioLiP
>protein
ARLAANSARLLQLHKTVPQWHLTDGHLSIKRKFQFSDFNEAWGFMSRVALYADKVDHHPNWYNVYNTVDVELSTHDAAGL
TEKDFALAKFMDDAAKNFE

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2v6t:B 100 99 1.0000 0.9900 1.0000 6.56e-71 2v6t:A
2 1f93:A 103 94 0.4545 0.4369 0.4787 1.77e-27 1dcp:A, 1dcp:B, 1dcp:C, 1dcp:D, 1dcp:E, 1dcp:F, 1dcp:G, 1dcp:H, 1f93:B, 1f93:C, 1f93:D
3 7pkq:s 87 41 0.1212 0.1379 0.2927 0.13
4 8q3b:A 1423 60 0.1818 0.0126 0.3000 0.16 8q3k:A
5 8iib:A 355 45 0.1313 0.0366 0.2889 1.4 8iib:B
6 3ty3:A 358 64 0.2121 0.0587 0.3281 2.6 3ty3:B
7 7aor:d 445 38 0.1414 0.0315 0.3684 2.9
8 4ihq:A 512 27 0.1111 0.0215 0.4074 6.4 4ihq:B, 4ihq:C
9 7ane:d 343 38 0.1313 0.0379 0.3421 9.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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