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BioLiP
>protein
ARIIRYFYNAKAGLCQTFVYGGCRAKRNNFKSAEDCMRTCGGA

The query sequence (length=43) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4bnr:J 58 43 1.0000 0.7414 1.0000 2.34e-26 1bhc:J, 4bnr:I, 1bpi:A, 1bz5:A, 2fi3:I, 2fi4:I, 2fi5:I, 3fp7:J, 2ftl:I, 2ftm:B, 3ldj:B, 3ldj:C, 6pti:A, 1qlq:A
2 5nx1:D 42 41 0.4419 0.4524 0.4634 9.27e-09 5nx3:D
3 5jbt:Y 38 38 0.3721 0.4211 0.4211 3.94e-07
4 4bqd:A 78 40 0.3721 0.2051 0.4000 5.53e-07 4bqd:B
5 2knt:A 58 38 0.3023 0.2241 0.3421 6.67e-05 1knt:A
6 2pfy:A 301 22 0.2093 0.0299 0.4091 1.8 2pfy:B, 2pfy:C, 2pfy:D
7 8btd:SC 210 42 0.3953 0.0810 0.4048 6.3 8br8:SC, 8brm:SC, 8bsi:SC, 8bsj:SC, 8btr:SC, 8fvy:D, 8g4s:D, 7pwf:D, 7pwo:D1
8 6ffn:A 182 20 0.1860 0.0440 0.4000 7.1 1cqq:A, 6ffs:A, 5fx5:A, 5fx6:A, 2xya:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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