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BioLiP
>protein
AQYEDGKQYTTLEKPVAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFMGGDLGKDLTQAWAVAM
ALGVEDKVTVPLFEGVQKTQTIRSASDIRDVFINAGIKGEEYDAAWNSFVVKSLVAQQEKAAADVQLRGVPAMFVNGKYQ
LNPQGMDTSNMDVFVQQYADTVKYLSEK

The query sequence (length=188) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2ndo:A 189 188 1.0000 0.9947 1.0000 2.72e-141 6bqx:A, 6br4:A, 6br4:B, 8cxd:A, 8cxd:B, 8czm:A, 8czm:B, 8czn:A, 8czn:B, 8d10:A, 8d10:B, 8d11:A, 8d11:B, 8d12:A, 8d12:B, 8dg1:B, 8dg2:B, 3dks:B, 3dks:C, 3dks:A, 3dks:D, 8dn0:A, 8dn0:B, 8eoc:B, 8eqo:B, 7l76:A, 7l76:B, 7l7c:A, 7l7c:B, 7lhp:A, 7lhp:B, 7lsm:A, 6pbi:A, 6pc9:A, 6pd7:A, 6pdh:A, 6pg1:A, 6pg1:B, 6pg2:A, 6pg2:B, 6pgj:A, 6pgj:B, 6piq:A, 6piq:B, 6pli:A, 6pli:B, 6pmf:A, 6pmf:B, 6pml:A, 6pml:B, 6poh:A, 6poh:B, 6poi:A, 6poi:B, 6poq:A, 6poq:B, 6pvy:A, 6pvy:B, 6pvz:A, 6pvz:B, 7s1c:A, 7s1c:B, 7s1d:A, 7s1d:B, 7s1f:A, 7s1f:B, 7s1l:A, 7s1l:B, 4tky:B, 4tky:A, 4tky:C, 4tky:D, 7ttv:A, 7ttv:B, 8u1y:A, 8u1y:B, 8u59:A, 8u59:B, 8ubq:A, 8ubq:B, 4wet:A, 4wey:A, 4wf4:B, 4wf5:A, 4wf5:B, 6whd:A, 6whd:B, 6xsp:A, 6xsp:B, 6xsq:A, 6xsq:B, 6xt3:A, 6xt3:B, 4zij:A, 4zij:B
2 4od7:A 187 185 0.5585 0.5615 0.5676 9.48e-78 4od7:C, 4od7:B
3 7lui:A 180 185 0.3777 0.3944 0.3838 4.03e-43
4 5tlq:A 190 165 0.2713 0.2684 0.3091 1.85e-19 5dch:A, 4zl8:A
5 7luh:A 191 186 0.2872 0.2827 0.2903 4.83e-15 7luj:A, 7luj:B, 7luj:C, 7luj:D, 5vyo:A, 5vyo:B, 5vyo:C, 5vyo:D
6 2rem:C 191 162 0.2021 0.1990 0.2346 3.16e-08
7 3feu:A 183 197 0.2660 0.2732 0.2538 0.024
8 7tmm:B 464 62 0.1117 0.0453 0.3387 1.2 7tmo:B, 7tmp:B
9 8w2h:A 761 87 0.1223 0.0302 0.2644 1.9 7lw1:A, 7lw1:D, 7lw1:E, 7lw1:F, 8w2g:A, 8w2g:B, 8w2g:D, 8w2g:C, 8w2h:B, 8w2h:C, 8w2h:D, 8w2j:E, 8w2j:F, 8w2j:G, 8w2j:H, 8w2j:A, 8w2j:B, 8w2j:C, 8w2j:D
10 4z7x:A 211 26 0.0585 0.0521 0.4231 2.7 4z7x:B
11 3idv:A 235 31 0.0691 0.0553 0.4194 7.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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