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BioLiP
>protein
AQVLRGTVTDFPGFDERADAETLRKAMKGLGTDEESILTLLTSRSNAQRQEISAAFKTLFGRDLLDDLKSELTGKFEKLI
VALMKPSRLYDAYELKHALKGAGTNEKVLTEIIASRTPEELRAIKQVYEEEYGSSLEDDVVGDTSGYYQRMLVVLLQANR
DPDAGIDEAQVEQDAQALFQAGELKWGTDEEKFITIFGTRSVSHLRKVFDKYMTISGFQIEETIDRETSGNLEQLLLAVV
KSIRSIPAYLAETLYYAMKGAGTDDHTLIRVMVSRSEIDLFNIRKEFRKNFATSLYSMIKGDTSGDYKKALLLLCGEDD

The query sequence (length=319) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1anw:A 319 319 1.0000 1.0000 1.0000 0.0 1a8a:A, 1a8b:A, 1anw:B, 1anx:A, 1anx:B, 1anx:C, 1avh:A, 1avh:B, 1avr:A, 1bc0:A, 1bc1:A, 1bc3:A, 1bcw:A, 1bcy:A, 1bcz:A, 1g5n:A, 8gyc:B, 8h0j:A, 8h9z:A, 1hak:B, 1hak:A, 1hvd:A, 1hve:A, 1hvf:A, 6k22:A, 1sav:A, 2xo2:A, 2xo3:A
2 2h0k:A 318 317 0.8966 0.8994 0.9022 0.0 2h0k:B, 2h0l:A, 2ie6:A, 2ie7:A, 1n41:A, 1n42:A, 1n44:A, 2ran:A
3 1yj0:A 317 314 0.7774 0.7823 0.7898 0.0 1ala:A, 1yii:A
4 2zoc:A 319 314 0.5768 0.5768 0.5860 3.31e-131 1ann:A, 1i4a:A, 2zoc:B
5 1m9i:A 664 315 0.5705 0.2741 0.5778 3.72e-125
6 1m9i:A 664 322 0.4890 0.2349 0.4845 2.06e-100
7 1m9i:A 664 318 0.2759 0.1325 0.2767 6.55e-27
8 1avc:A 642 312 0.5611 0.2788 0.5737 2.10e-122
9 1avc:A 642 313 0.4734 0.2352 0.4824 6.46e-97
10 1avc:A 642 312 0.2790 0.1386 0.2853 1.36e-28
11 6tu2:A 314 312 0.5329 0.5414 0.5449 4.77e-121 6tu2:B, 6tu2:C
12 6tu2:A 314 133 0.1411 0.1433 0.3383 3.06e-17 6tu2:B, 6tu2:C
13 1w3w:A 311 306 0.5486 0.5627 0.5719 2.92e-114
14 1axn:A 323 315 0.4953 0.4892 0.5016 2.09e-109 1aii:A
15 8w5s:A 301 299 0.4608 0.4884 0.4916 6.13e-104 8w5s:B, 8w5s:C
16 1aei:A 315 315 0.4577 0.4635 0.4635 1.45e-92 1aei:B, 1aei:C, 1aei:D, 1aei:E, 1aei:F, 1dm5:A, 1dm5:B, 1dm5:C, 1dm5:D, 1dm5:E, 1dm5:F
17 1aei:A 315 69 0.0752 0.0762 0.3478 5.83e-05 1aei:B, 1aei:C, 1aei:D, 1aei:E, 1aei:F, 1dm5:A, 1dm5:B, 1dm5:C, 1dm5:D, 1dm5:E, 1dm5:F
18 7pc5:A 405 318 0.4577 0.3605 0.4591 1.89e-92
19 7qqn:C 414 315 0.4545 0.3502 0.4603 3.57e-92 7pc7:A, 7pc7:B, 7pc8:A, 7pc8:B, 7qql:C, 7qql:B, 7qqn:A
20 7p70:A 407 315 0.4545 0.3563 0.4603 3.71e-92 7pc4:A, 7qql:A
21 7p73:A 420 315 0.4545 0.3452 0.4603 5.18e-92 8ael:A, 7p74:A, 7pc9:A, 7pc9:B, 7r2m:A, 7r2m:D, 7r2t:A
22 7qqm:A 413 315 0.4545 0.3511 0.4603 5.76e-92
23 7qqm:A 413 260 0.2100 0.1622 0.2577 8.77e-10
24 5n7d:A 423 315 0.4545 0.3428 0.4603 7.74e-92 2i04:A, 2i04:B, 5n7d:B, 5n7f:A, 5n7f:B, 5n7g:A, 7p71:A, 7p71:B, 6twq:B, 6twq:A, 6twu:B, 6twu:A, 6twx:B, 6twx:A, 6twy:B, 6twy:A
25 7pc3:A 405 310 0.4483 0.3531 0.4613 6.95e-91 2awu:B, 2aww:A, 2awx:B, 8cn3:A, 8cn3:B, 2g2l:A, 2g2l:B, 4g69:A, 2i0l:A, 2i0l:B, 2m3m:A, 4oaj:A, 2oqs:A, 3rl8:B
26 7pcb:A 415 310 0.4483 0.3446 0.4613 8.39e-91 7e0b:A, 5elq:A, 5elq:B, 5em9:A, 5ema:A, 5emb:A, 7p72:A, 3qgl:A, 3qgl:B, 3qgl:C, 3qgl:D, 3qgl:E, 4z8j:A
27 6t58:A 524 319 0.4514 0.2748 0.4514 6.38e-90 3c1v:A, 3c1v:B, 3c1v:C, 3c1v:D, 4cfq:A, 4cfq:B, 4cfq:C, 4cfq:D, 4cfr:A, 3cga:A, 3cga:B, 7eq7:A, 4eto:B, 4hre:A, 4hre:C, 4hre:B, 4hre:D, 4hsz:A, 4hsz:B, 4hsz:C, 4hsz:D, 2hyu:A, 2hyv:A, 2hyw:A, 2hyw:B, 3ko0:A, 3ko0:C, 3ko0:B, 3ko0:D, 3ko0:J, 3ko0:I, 3ko0:E, 3ko0:H, 3ko0:K, 3ko0:S, 3ko0:L, 3ko0:N, 3ko0:M, 3ko0:P, 3ko0:O, 3ko0:R, 3ko0:T, 5lpu:A, 5lpu:B, 5lpu:C, 5lpu:D, 5lpx:A, 5lq0:A, 5lq0:B, 5lq2:A, 5lq2:B, 3m0w:I, 3m0w:A, 3m0w:E, 3m0w:H, 5n7g:B, 7psp:A, 7psp:B, 7psq:A, 7psq:C, 2q91:A, 2q91:B, 6t58:B, 4x9p:A, 1xjl:A, 1xjl:B, 7zvn:A, 7zvx:A, 7zvx:B, 3zwh:A
28 7nmi:B 488 308 0.4483 0.2930 0.4643 2.85e-89 1j55:A
29 1mcx:A 304 303 0.4357 0.4572 0.4587 2.06e-85
30 1mcx:A 304 146 0.1567 0.1645 0.3425 1.86e-15
31 4mdv:A 351 335 0.3730 0.3390 0.3552 2.42e-59 4mdv:B
32 4mdv:A 351 251 0.2038 0.1852 0.2590 4.15e-16 4mdv:B
33 3brx:A 317 309 0.2947 0.2965 0.3042 2.21e-38
34 3brx:A 317 237 0.1944 0.1956 0.2616 7.65e-15
35 3brx:A 317 241 0.1661 0.1672 0.2199 3.18e-09
36 3chl:A 315 241 0.1944 0.1968 0.2573 7.27e-12 3chj:A, 3chk:A
37 3chl:A 315 141 0.1223 0.1238 0.2766 0.002 3chj:A, 3chk:A
38 3chl:A 315 153 0.1003 0.1016 0.2092 0.52 3chj:A, 3chk:A
39 4evh:A 294 206 0.1536 0.1667 0.2379 6.98e-05
40 2iic:A 302 198 0.1191 0.1258 0.1919 0.011 2iic:B, 2iic:C, 2iic:D
41 5ci5:A 393 46 0.0596 0.0483 0.4130 1.3 5ci5:B
42 8ro0:n 77 59 0.0533 0.2208 0.2881 3.2 8ro0:g, 8ro1:g
43 6v4x:G 77 59 0.0502 0.2078 0.2712 3.3 7a5p:k, 7a5p:g, 7abg:k, 7abi:k, 6ah0:n, 6ahd:S, 6ahd:f, 6ahd:n, 7b0y:h, 8c6j:r, 8c6j:g, 8ch6:m, 8ch6:9, 7dvq:g, 7dvq:n, 7evo:d, 9fmd:n, 9fmd:g, 8h6e:5f, 8h6e:4f, 8h6e:2f, 8h6j:5f, 8h6j:4f, 8h6j:2f, 8h6k:5f, 8h6k:4f, 8h6k:2f, 8h6l:5f, 8h6l:4f, 8h6l:2f, 8hk1:d, 8i0p:k, 8i0r:k, 8i0s:f, 8i0s:k, 8i0t:k, 8i0u:f, 8i0u:k, 8i0v:k, 8i0w:n, 6icz:g, 6id0:g, 6id1:g, 5mqf:k, 5mqf:d, 5o9z:k, 4pjo:G, 4pjo:g, 4pjo:U, 4pjo:u, 8q7q:g, 8q7v:g, 8q7w:g, 8q7x:g, 8q91:n, 6qdv:r, 6qdv:g, 8qo9:2g, 8qo9:4g, 7qtt:m, 6qw6:4g, 6qw6:5g, 6qx9:1g, 6qx9:5g, 6qx9:2g, 6qx9:4g, 8qxd:2g, 8qxd:4g, 8qxd:5g, 8qzs:5g, 8qzs:2g, 8qzs:4g, 8r08:1g, 8r08:2g, 8r08:4g, 8r08:5g, 8r09:2g, 8r09:5g, 8r09:4g, 8r0a:5g, 8r0a:2g, 8r0a:4g, 8r0b:2g, 8r0b:4g, 8r0b:5g, 8rc0:n, 8rm5:2g, 8rm5:5g, 8rm5:4g, 8ro2:g, 7vpx:d, 7vpx:n, 7w59:g, 7w59:n, 7w5a:g, 7w5a:n, 7w5b:g, 7w5b:n, 4wzj:G, 4wzj:N, 4wzj:U, 4wzj:GG, 4wzj:NN, 4wzj:UU, 4wzj:GGG, 4wzj:NNN, 4wzj:UUU, 4wzj:GGGG, 4wzj:NNNN, 4wzj:UUUU, 5xjc:g, 5xjc:n, 6y53:k, 6y5q:k, 8y6o:g, 8y6o:n, 8y6o:u, 8y7e:n, 5yzg:g, 5yzg:n, 5z56:g, 5z56:n, 5z57:g, 5z57:n, 5z58:g, 5z58:n
44 4uy7:A 327 69 0.0627 0.0612 0.2899 3.6 6fnq:A, 6fnq:B, 6fnr:A, 6fnr:B, 6fns:A, 6fns:B, 6fnt:A, 6fnt:B, 4pin:A, 4pin:B, 4pio:A, 4pio:B, 4pip:A, 4pip:B, 4pip:C, 4pip:D, 4uy5:A, 4uy6:A, 4uy7:B
45 8ro0:f 72 59 0.0502 0.2222 0.2712 4.0 8ro1:f
46 7t92:C 317 74 0.0721 0.0726 0.3108 5.0
47 4v8m:Bu 298 78 0.0658 0.0705 0.2692 6.4 8ova:Bu, 8ove:Bu

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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