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BioLiP
>protein
APTLTARLYSLLFRRTSTFALTIVVGALFFERAFDQGADAIYEHINEGKLWKHIKHKYE

The query sequence (length=59) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1be3:J 62 59 1.0000 0.9516 1.0000 2.33e-39 1bgy:J, 1bgy:V, 7dkf:J1, 7dkf:V1, 5luf:j, 5luf:v, 5nmi:W, 5nmi:J, 1sqp:J, 2ybb:j, 2ybb:J
2 5xte:D 62 59 0.8814 0.8387 0.8814 8.64e-36 5xte:Q, 5xth:AD, 5xth:AQ, 5xti:AD, 5xti:AQ
3 8bel:I 57 47 0.3220 0.3333 0.4043 1.59e-06 8bel:S, 8bpx:AI, 8bpx:BI, 8bq5:AI, 8bq5:BI, 8bq6:AI, 8bq6:BI
4 8e73:V 59 47 0.2881 0.2881 0.3617 4.13e-05 8e73:J
5 2cfm:A 561 39 0.2542 0.0267 0.3846 0.37
6 6wbo:A 555 39 0.2712 0.0288 0.4103 0.65
7 8cej:A 449 36 0.1864 0.0245 0.3056 1.4 8cej:B, 8cej:C, 8cej:D, 8cek:A, 8cek:B, 8cek:C, 8cek:D
8 3rbm:B 362 27 0.1864 0.0304 0.4074 2.1 3cc9:A, 3cc9:B, 3cc9:D, 3ez3:A, 3ez3:B, 3ez3:C, 3ez3:D, 5hn7:A, 5hn7:B, 5hn7:C, 5hn7:D, 5hn7:G, 5hn7:E, 5hn7:F, 5hn7:H, 5hn8:C, 5hn9:A, 5hn9:B, 5hn9:D, 5hna:A, 5hna:B, 5hna:C, 5hna:D, 3ldw:A, 3ldw:B, 3ldw:C, 3ldw:D, 3ph7:A, 3ph7:B, 3ph7:D, 3rbm:A, 3rbm:C, 3rbm:D, 3ryw:A, 3ryw:D, 3ryw:B, 3ryw:C
9 5hn8:D 334 27 0.1864 0.0329 0.4074 2.1 3cc9:C, 5hn8:A, 5hn8:B, 5hn9:C, 3ph7:C
10 7rpx:E 590 41 0.2373 0.0237 0.3415 2.7 2hix:A, 7rpo:E, 7rpw:E
11 3cpm:A 184 34 0.2203 0.0707 0.3824 3.2 3m6o:A, 3m6o:B, 3m6p:A, 3m6p:B, 3m6q:A, 3m6r:A, 3m6r:B, 3m6r:C, 3m6r:D, 3o3j:A, 3pn2:A, 3pn3:A, 3pn3:B, 3pn4:A, 3pn5:A, 3pn6:A, 3pn6:B
12 4eq5:A 516 39 0.2373 0.0271 0.3590 7.4
13 1z16:A 344 16 0.1695 0.0291 0.6250 8.2 1z17:A, 1z18:A
14 7vru:B 494 48 0.2373 0.0283 0.2917 8.3 7vs4:B
15 6gaw:Ah 120 22 0.1525 0.0750 0.4091 9.8 6gaz:Ah, 7nql:Ah, 7nsi:Ah, 7nsj:Ah, 6ydp:Ah, 6ydw:Ah

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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