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BioLiP
>protein
ANGLTVAQNQVLNLIKACPRPEGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYSTVDDDHFKSTDAE

The query sequence (length=69) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1dpu:A 69 69 1.0000 1.0000 1.0000 1.47e-47 4mqv:A, 4mqv:C
2 2z8p:A 217 22 0.1594 0.0507 0.5000 0.86 2q8y:A
3 5okn:G 402 25 0.1304 0.0224 0.3600 1.0 6squ:A
4 5j37:E 206 26 0.1304 0.0437 0.3462 2.5 5j37:B, 5j37:A, 5j37:D, 5j37:C
5 8r09:N 834 52 0.2029 0.0168 0.2692 2.6 6ahd:N, 5o9z:G, 8q7n:N, 8qo9:N, 8qpe:N, 8qzs:N, 8r0b:N, 8rc0:E, 8rm5:N
6 6qw6:5J 803 52 0.2029 0.0174 0.2692 2.6 8h6e:4G, 8h6j:4G, 8h6k:4G, 8h6l:4G, 8qp8:N, 6qx9:5J, 8y6o:G
7 8qoz:N 457 52 0.2029 0.0306 0.2692 2.9 8qpa:N, 8qpb:N
8 7pub:Cr 267 29 0.1594 0.0412 0.3793 4.9 6hiv:Cr, 6hiw:Cr, 6hiy:Cr
9 4duq:B 90 31 0.1739 0.1333 0.3871 9.3 4duq:A
10 6za4:B 423 48 0.2174 0.0355 0.3125 9.4 3rv6:B, 3rv9:C
11 3veh:B 451 48 0.2174 0.0333 0.3125 9.4 2g5f:A, 2g5f:B, 3log:B, 8qc4:A, 8qc4:B, 8qn5:A, 8qn5:B, 8qn5:C, 8qn5:D, 3rv6:A, 3rv7:A, 3rv7:B, 3rv7:C, 3rv7:D, 3rv8:A, 3rv8:B, 3rv8:C, 3rv8:D, 3rv9:A, 3rv9:B, 3rv9:D, 3st6:A, 3st6:B, 3veh:A, 3veh:C, 3veh:D, 6za4:A, 6za4:C, 6za4:D, 6za5:B, 6za5:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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