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BioLiP
>protein
ANENILKLKLYRSLGVILDLENDQVLINRKNDGNIDILPLDNNLSDFYKTKYIWERLGK

The query sequence (length=59) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5t6j:A 59 59 1.0000 1.0000 1.0000 3.25e-36 4geq:D, 4geq:B
2 7kdf:C 95 56 0.8814 0.5474 0.9286 1.74e-31
3 5i5m:B 576 42 0.2542 0.0260 0.3571 0.90 5i5m:A
4 8tl0:I 479 41 0.1864 0.0230 0.2683 1.3 8tl0:A, 8tl0:D, 8tl0:B, 8tl0:C, 8tl0:L, 8tl0:K
5 2pny:A 233 34 0.2034 0.0515 0.3529 1.4
6 8ro2:C 908 46 0.2542 0.0165 0.3261 2.0 7aav:r, 7abf:r, 7abg:r, 7abi:r, 6ah0:C, 6ahd:C, 8c6j:C, 8ch6:b, 7dvq:C, 6ff4:B, 6ff7:B, 9fmd:C, 8h6e:5C, 8h6j:5C, 8h6k:5C, 8h6l:5C, 8i0p:C, 8i0r:C, 8i0s:C, 8i0t:C, 8i0u:C, 8i0v:C, 8i0w:C, 6icz:C, 6id0:C, 6id1:C, 8q7q:C, 8q7v:C, 8q7w:C, 8q7x:C, 8q91:C, 6qdv:C, 8qp8:C, 7qtt:b, 6qw6:5C, 6qx9:5C, 8rc0:C, 7w59:C, 7w5a:C, 7w5b:C, 5xjc:C, 8y6o:D, 5yzg:C, 5z56:C, 5z57:C, 5z58:C, 6zym:B
7 7z67:A 393 24 0.2034 0.0305 0.5000 2.9
8 6dy0:B 231 17 0.1695 0.0433 0.5882 6.5 6dxz:B
9 1foh:C 656 22 0.1695 0.0152 0.4545 6.6 1foh:A, 1foh:B, 1foh:D, 1pn0:A, 1pn0:B, 1pn0:C, 1pn0:D
10 1unf:X 214 33 0.1695 0.0467 0.3030 7.0
11 6dxx:B 231 17 0.1695 0.0433 0.5882 7.1 6dxx:D, 6dxx:F
12 8hxx:N 375 35 0.2373 0.0373 0.4000 7.5 8hxy:N, 8hy0:N, 8i3f:B, 8jho:N, 8tof:G, 8w9c:E, 8w9d:E, 8w9e:E, 8w9f:E
13 2i6k:A 224 34 0.2034 0.0536 0.3529 8.0 2dho:A, 2i6k:B, 2icj:A, 2ick:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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