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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
ANDTVVVGSIIFTEGIIVANMVAEMIEAHTDLKVVRKLNLGGYNVNFEAIKRGGANNGIDIYVEYTGHGLVDILGFPATT
DPEGAYETVKKEYKRKWNIVWLKPLGFNNTYTLTVKDELAKQYNLKTFSDLAKISDKLILGATMWFLEGPDGYPGLQKLY
NFKFKHTKSMDMGIRYTAIDNNEVQVIDAWATDGLLVSHKLKILEDDKAFFPPYYAAPIIRQDVLDKHPELKDVLNKLAN
QISLEEMQKLNYKVDGEGQDPAKVAKEFLKEKGLILQV

The query sequence (length=278) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7s7x:A 278 278 1.0000 1.0000 1.0000 0.0 7s7x:B, 7s7x:C, 6v1r:A
2 7s7t:A 509 210 0.7194 0.3929 0.9524 1.67e-141 8i4o:A, 8i4o:C, 8i4o:E, 8i4o:G, 8i4o:I, 8i4o:K
3 7s7t:A 509 76 0.2662 0.1454 0.9737 1.55e-41 8i4o:A, 8i4o:C, 8i4o:E, 8i4o:G, 8i4o:I, 8i4o:K
4 3ppo:A 272 271 0.4029 0.4118 0.4133 6.73e-65 3ppo:B, 3ppq:A, 3ppq:B, 3ppr:A, 3ppr:B
5 7txl:A 275 276 0.3777 0.3818 0.3804 2.63e-62 7txk:A, 7txk:B, 7txl:B
6 6eyh:A 280 273 0.3741 0.3714 0.3810 9.49e-62 6eyl:A, 6eyl:B, 5nxy:A, 5nxy:C, 3r6u:A
7 8dp7:A 265 271 0.3669 0.3849 0.3764 2.03e-57 8dp7:B, 8dp7:C, 8dp7:D, 8dp7:E
8 1sw1:A 270 275 0.3885 0.4000 0.3927 1.23e-50 1sw1:B, 1sw4:A, 1sw4:B
9 5nxx:C 265 91 0.0899 0.0943 0.2747 0.076 2b4m:A, 2b4m:B, 3chg:D, 3chg:A, 3chg:B, 3chg:C, 5nxx:D
10 8pjn:b 296 40 0.0432 0.0405 0.3000 1.3
11 7d6a:B 477 47 0.0540 0.0314 0.3191 2.5 7d6a:A, 7d6b:A, 7d6b:B
12 2reg:A 290 87 0.0755 0.0724 0.2414 5.5 2reg:B, 2rin:A, 2rin:B
13 3dy8:A 328 19 0.0360 0.0305 0.5263 9.3 6a3n:A, 6a3n:B, 8bpy:A, 8bpy:B, 3dy8:B, 3dyl:A, 3dyl:B, 3dyn:A, 3dyn:B, 3dyq:A, 3dys:A, 3dys:B, 4e90:A, 4e90:B, 7f0i:A, 7f0i:B, 4g2j:A, 4g2j:B, 4g2l:A, 4g2l:B, 4gh6:A, 4gh6:B, 2hd1:A, 2hd1:B, 3jsi:A, 3jsi:B, 3jsw:A, 3jsw:B, 3k3e:A, 3k3e:B, 3k3h:A, 3k3h:B, 6lzz:A, 6lzz:B, 3n3z:A, 3n3z:B, 4qge:A, 4qge:B, 3qi3:A, 3qi3:B, 3qi4:A, 3qi4:B, 4y86:A, 4y86:B, 4y87:A, 4y87:B, 4y8c:A, 4y8c:B, 2yy2:A, 2yy2:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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