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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
AMYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFACGGKLKNWEPGDRAWSEHRRHFPNCFFVLGRN

The query sequence (length=76) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1c9q:A 117 76 1.0000 0.6496 1.0000 3.25e-55 8aza:C, 1i3o:E, 1i3o:F, 4j3y:A, 4j3y:C, 4j44:A, 4j44:C, 4j45:A, 4j45:C, 4j46:A, 4j46:C, 4j47:A, 4j47:C, 4j48:A, 4j48:C, 4kju:A, 4kju:C, 4kjv:A, 4kjv:C, 4wvs:A, 4wvt:A, 4wvt:B, 4wvu:A
2 7qgj:A 79 72 0.6053 0.5823 0.6389 1.42e-28 7qgj:B
3 5yud:A 1238 71 0.5395 0.0331 0.5775 1.91e-25
4 5yud:A 1238 80 0.3947 0.0242 0.3750 3.00e-11
5 7rav:A 773 71 0.5395 0.0530 0.5775 6.24e-25
6 7rav:A 773 80 0.3947 0.0388 0.3750 6.80e-11
7 7rav:A 773 69 0.3421 0.0336 0.3768 8.77e-11
8 8fvu:A 1361 69 0.5000 0.0279 0.5507 3.08e-22 2vm5:A
9 8fvu:A 1361 68 0.4737 0.0265 0.5294 1.14e-20 2vm5:A
10 8fvu:A 1361 75 0.3553 0.0198 0.3600 2.47e-12 2vm5:A
11 3t6p:A 330 73 0.4342 0.1000 0.4521 5.42e-22 3d9t:A, 3d9t:B, 3d9u:A, 8dsf:A, 8dsf:B, 8dsf:C, 8dsf:D, 8dso:D, 4eb9:A, 4eb9:B, 4eb9:C, 4eb9:D, 6exw:A, 6exw:C, 6hpr:A, 4hy4:A, 4hy4:B, 4hy5:A, 4hy5:B, 4lge:A, 4lge:B, 4lgu:A, 4lgu:B, 5m6n:A, 5m6n:B, 4mti:A, 4mti:B, 3mup:A, 3mup:B, 3mup:C, 3mup:D, 4mu7:A, 4mu7:B, 3oz1:A, 3oz1:B, 3oz1:C, 3oz1:D, 1qbh:A, 7trm:A, 3uw4:A, 6w74:A, 6w7o:C, 6w7o:D, 6w8i:F, 6w8i:D, 6w8i:E
12 2uvl:B 95 73 0.4342 0.3474 0.4521 4.42e-21 2uvl:A
13 4kmn:A 103 73 0.4342 0.3204 0.4521 6.65e-21 7trl:A
14 3f7g:B 101 72 0.4737 0.3564 0.5000 1.26e-20 3f7g:A, 3f7g:C, 3f7g:D, 3f7g:E, 1oxn:E, 1oxn:A, 1oxn:B, 1oxn:C, 1oxn:D, 1oxq:E, 1oxq:A, 1oxq:B, 1oxq:C, 1oxq:D, 1oy7:E, 1oy7:A, 1oy7:B, 1oy7:C, 1oy7:D
15 2i3h:B 95 73 0.4737 0.3789 0.4932 1.89e-20 3f7h:A, 3f7h:B, 3f7i:A, 3f7i:B, 3gt9:A, 3gt9:B, 3gta:A, 3gta:B, 2i3h:A, 2i3i:A, 2i3i:B, 1tw6:A, 1tw6:B, 3uw5:A, 3uw5:B
16 1jd5:A 105 68 0.4079 0.2952 0.4559 6.03e-19 1jd4:A, 1jd4:B, 1jd6:A, 1q4q:G, 1q4q:I, 1q4q:F, 1q4q:H, 1q4q:J, 1q4q:A, 1q4q:C, 1q4q:D, 1q4q:B, 1q4q:E
17 3m0d:D 75 68 0.3684 0.3733 0.4118 2.99e-17 3m0a:D, 7nk0:D, 7nk0:E
18 8atu:A 2837 80 0.4605 0.0123 0.4375 4.78e-17 8atu:B, 8atx:A, 8atx:B, 8auk:A, 8auk:B, 8auw:B
19 8auw:A 2900 80 0.4605 0.0121 0.4375 4.79e-17
20 3m1d:A 78 68 0.3553 0.3462 0.3971 5.12e-17 3m1d:B
21 2pop:D 80 67 0.3947 0.3750 0.4478 1.94e-16 6gjw:A, 6gjw:B, 6gjw:C, 6gjw:D, 4mtz:A, 4mtz:B, 4mtz:C, 4mtz:D, 4oxc:A, 4oxc:B, 4oxc:C, 4oxc:D, 2poi:A, 2pop:B, 6qci:A, 6qci:B, 6qci:C, 6qci:D, 2qra:D, 2qra:C, 2qra:B, 2qra:A
22 3sip:F 108 74 0.4211 0.2963 0.4324 2.75e-16 1sdz:A, 1se0:A, 3sip:E, 3siq:A, 3siq:B, 3siq:C, 3siq:D, 3siq:E, 3siq:F
23 1xb0:F 103 73 0.3947 0.2913 0.4110 5.73e-15 1xb0:A, 1xb0:B, 1xb0:C, 1xb0:D, 1xb0:E, 1xb1:A, 1xb1:B, 1xb1:C, 1xb1:D, 1xb1:E, 1xb1:F
24 1f9x:A 117 73 0.3684 0.2393 0.3836 2.84e-14 5c0k:A, 5c0l:A, 5c3h:A, 5c3k:A, 5c7a:A, 5c7b:A, 5c7c:A, 5c7d:A, 5c83:A, 5c84:A, 3clx:D, 3clx:A, 3clx:B, 3clx:C, 3cm2:D, 3cm2:H, 3cm2:A, 3cm2:B, 3cm2:C, 3cm2:G, 3cm2:E, 3cm2:F, 3cm2:I, 3cm2:J, 3cm7:C, 3cm7:A, 3cm7:B, 3cm7:D, 4ec4:A, 4ec4:F, 4ec4:B, 4ec4:G, 4ec4:C, 4ec4:D, 4ec4:K, 4ec4:E, 4ec4:L, 4ec4:J, 3eyl:A, 3eyl:B, 6ey2:A, 6ey2:C, 6ey2:B, 6ey2:G, 6ey2:D, 6ey2:E, 6ey2:F, 6ey2:H, 1g3f:A, 1g73:C, 1g73:D, 3g76:A, 3g76:B, 3g76:C, 3g76:D, 3g76:E, 3g76:F, 3g76:G, 3g76:H, 8gh7:A, 8gh7:B, 6h6q:A, 6h6q:B, 6h6r:A, 3hl5:A, 3hl5:B, 4hy0:A, 4hy0:D, 4hy0:B, 4hy0:G, 4hy0:C, 4hy0:E, 4hy0:F, 4hy0:H, 2jk7:A, 4kmp:A, 4kmp:B, 5m6e:A, 5m6f:A, 5m6h:A, 5m6l:A, 5m6m:A, 1nw9:A, 2opy:A, 2opz:A, 2opz:B, 2opz:C, 2opz:D, 5oqw:A, 5oqw:B, 1tfq:A, 1tft:A, 2vsl:A
25 1m4m:A 112 79 0.3684 0.2500 0.3544 4.18e-12
26 3ued:C 139 75 0.3289 0.1799 0.3333 1.80e-09 4a0i:A, 4a0i:B, 4a0j:A, 4a0j:B, 4a0n:A, 1e31:A, 1e31:B, 1f3h:A, 1f3h:B, 7lbk:B, 7lbk:A, 7lbo:A, 7lbo:B, 7lbp:A, 7lbp:C, 7lbq:A, 2qfa:A, 2raw:A, 2rax:A, 2rax:E, 2rax:X, 6sho:A, 6sho:B, 3uec:A, 3ued:A, 3uee:A, 3uee:C, 3uef:A, 3uef:C, 3ueg:A, 3ueg:B, 3ueh:A, 3ueh:B, 3uei:A, 3uei:B, 3uig:A, 3uig:B, 3uih:A, 3uih:B, 3uii:A, 3uii:B, 3uij:A, 3uij:B, 3uik:A, 3uik:B, 1xox:A, 1xox:B, 6yie:A, 6yie:D, 6yif:A, 6yih:A
27 5myj:BN 121 52 0.2500 0.1570 0.3654 0.17
28 8a57:N 122 56 0.2368 0.1475 0.3214 0.19 8a5i:N, 8a63:N, 7aqc:K, 7aqd:K, 7as8:O, 7as9:O, 7asm:I, 7asn:G, 7aso:N, 7asp:I, 8buu:K, 6ddd:W, 6ddg:W, 6fxc:AI, 6fxc:BI, 6ha1:K, 6ha8:K, 5hkv:H, 5hl7:H, 6hma:I, 6htq:K, 3j3v:K, 3j3w:K, 3j9w:BN, 5li0:N, 5nd8:N, 5nd9:N, 5ngm:AI, 7nhk:N, 7nhl:N, 7nhm:N, 7nhn:N, 5njt:d, 5nrg:H, 7o5b:f, 6o8w:L, 6o8x:L, 6o8y:L, 6o8z:L, 6o90:L, 7ope:O, 8p2f:N, 8p2g:N, 8p2h:N, 7p48:I, 7p7q:N, 7p7r:N, 7p7s:N, 7p7t:N, 7p7u:N, 6ppf:K, 6ppk:K, 6pvk:K, 8qcq:K, 7qgu:K, 7qh4:K, 8qpp:f, 7qv1:K, 7qv2:K, 7qv3:K, 8r55:f, 6s0x:I, 6s0z:I, 6s12:I, 6s13:I, 8s1p:K, 8s1u:K, 7s9u:K, 7sae:K, 6sj6:N, 5t7v:LN, 5tcu:LN, 6tnn:d, 6tpq:d, 7ttu:W, 7ttw:W, 8uu4:M, 8uu5:M, 8uu6:M, 8uu7:M, 8uu8:M, 8uu9:M, 8uua:M, 6w6p:L, 4wce:H, 4wf9:H, 4wfa:H, 4wfb:H, 6wqn:W, 6wqq:W, 6wrs:W, 6wru:W, 6wu9:L, 8y36:I, 8y37:I, 8y38:I, 8y39:I, 6yef:N
29 8q6z:A 390 31 0.1711 0.0333 0.4194 0.44
30 4v4p:AN 122 54 0.2237 0.1393 0.3148 0.46 4v4r:BO, 4v4s:BO, 4v4t:BO
31 7jil:K 121 39 0.1711 0.1074 0.3333 0.68
32 6dzi:L 122 39 0.1842 0.1148 0.3590 0.98 6dzp:L, 7f0d:K, 8fr8:U, 8kab:L, 7kgb:K, 7msc:K, 7msh:K, 7msm:K, 7msz:K, 7mt2:K, 7mt3:K, 7mt7:K, 5o60:L, 5o61:L, 7s0s:M, 7sfr:K, 5v7q:K, 5v93:K, 8v9j:M, 8v9k:M, 8v9l:M, 8whx:N, 8why:N, 8wi7:N, 8wi8:N, 8wib:N, 8wic:N, 7xam:L, 5xym:K, 8xz3:L, 7y41:L, 5zeb:L, 5zep:L, 5zet:L
33 5oj5:A 310 28 0.1447 0.0355 0.3929 0.98 5ojr:A, 5ojr:B
34 4xqk:A 1517 38 0.1711 0.0086 0.3421 1.6 4xqk:B
35 1wql:A 436 23 0.1316 0.0229 0.4348 2.6
36 4lw9:A 119 66 0.2105 0.1345 0.2424 3.5 3fu1:A, 3fu1:B, 3gn9:A, 3gn9:B, 3gn9:C, 4lw9:B, 4lw9:C, 4lw9:D, 4lw9:E, 4lw9:F, 4lw9:I, 4lw9:J, 4lw9:K, 4lw9:L, 4lw9:Q, 4lw9:R
37 4a7p:A 429 15 0.1316 0.0233 0.6667 3.7 4a7p:B
38 5wkf:I 198 28 0.1316 0.0505 0.3571 6.6 5wkh:D
39 3cgh:A 507 16 0.0921 0.0138 0.4375 8.5 8uwv:A
40 6dj8:A 384 23 0.1184 0.0234 0.3913 9.4 6dj8:B
41 3en1:A 424 29 0.1447 0.0259 0.3793 9.8 3eqq:A
42 7oz8:AAA 474 22 0.1447 0.0232 0.5000 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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