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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AMWLTKLVLNPASRAARRDLANPYEMHRTLSKAVSRALEEGRERLLWRLEPPPVVLVQTLTEPDWSVLDEGYAQVFPPKP
FHPALKPGQRLRFRLRANPAKRLAATGKRVALKTPAEKVAWLERRLEEGGFRLLEGERGPWVQILQDTFLEVRRKLLQVQ
AVLFEGRLEVVDPERALATLRRGVGPGKALGLGLLSVAP

The query sequence (length=199) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2y8w:A 215 212 1.0000 0.9256 0.9387 1.21e-133 3qrp:A, 3qrq:A, 3qrr:A, 2y8y:A, 2y9h:A, 2y9h:C, 2y9h:E, 2y9h:G, 2y9h:I
2 2y9h:M 193 199 0.9648 0.9948 0.9648 1.10e-129 2y9h:K, 2y9h:O
3 8yha:B 268 266 0.3920 0.2910 0.2932 2.32e-15 8yb6:B
4 5h9f:K 159 199 0.3015 0.3774 0.3015 1.07e-14 5h9e:K
5 5cd4:A 199 215 0.3367 0.3367 0.3116 1.35e-14 5cd4:M, 4tvx:A, 4tvx:M, 4u7u:D, 4u7u:P
6 6c66:O 212 213 0.3266 0.3066 0.3052 5.48e-14 5u0a:A
7 4qyz:K 152 198 0.2864 0.3750 0.2879 1.57e-09
8 5u07:A 190 205 0.3065 0.3211 0.2976 2.02e-08
9 8br4:A 339 76 0.0854 0.0501 0.2237 0.79 8br4:B, 8br4:C, 8br4:D, 8br4:E, 8br4:F, 8br4:G, 8br4:H, 8br4:I, 8br4:J, 8br4:K, 8br4:L, 8br4:M, 8br4:N, 8br4:O, 8br4:P
10 8gz0:B 160 36 0.0754 0.0938 0.4167 1.2 8gz0:A, 7wrk:A, 7wwn:A, 7wwo:A, 7wwo:B
11 7k64:H 348 33 0.0704 0.0402 0.4242 4.4 7jyb:B, 7jyb:D, 7jyb:G, 7k14:H, 7k64:D, 7k64:G
12 7jw9:A 378 33 0.0704 0.0370 0.4242 4.7 7jw9:B, 7jw9:C, 7jw9:D, 7jyb:A, 7jyb:C, 7jyb:E, 7k14:A, 7k14:B, 7k14:C, 7k14:D, 7k14:E, 7k14:G, 7k64:A, 7k64:C, 7k64:E
13 7znp:A 502 52 0.0854 0.0339 0.3269 7.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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