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BioLiP
>protein
AMTGPKQQPLPPDVEGREDAIEVLRAFVLDGGLSIAFMRAFEDPEMWGLLLVDIARHAARSYARESEYTEDEALERIVEM
FEAELSRPTATTERTQ

The query sequence (length=96) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3ic3:B 96 96 1.0000 1.0000 1.0000 5.54e-66 3ic3:D
2 1cen:A 334 39 0.1667 0.0479 0.4103 1.0
3 3e3r:A 183 40 0.1458 0.0765 0.3500 3.3 3e3r:B
4 4fai:B 305 67 0.1979 0.0623 0.2836 4.2 4fai:A, 4fbe:A, 4fbe:B
5 5gan:G 318 47 0.1250 0.0377 0.2553 5.2 5gap:G
6 5nrl:G 372 47 0.1250 0.0323 0.2553 7.6 3jcm:K, 4yhw:A, 4yhw:B, 5zwm:J, 5zwo:J
7 3swr:A 965 61 0.1875 0.0187 0.2951 8.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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