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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
AMSYRVSTGAAHAAKGGGLVSGDSYSMMELGARKYAAAISDGRAHFESNETIKLLEKILESGIDEKIAIKTINSILSLRI
YSTLDLSIIDLQDASCKFLKVGSTPSFIKRGDQVMKVQASIINEFDVEVVSEQLKAGDLLIMMSDGIFEGPKHVENHDLW
MKRKMKGLKTNDPQEIADLLMEEVIRTRSGQIEDDMTVVVVRIDHNTPKW

The query sequence (length=210) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3t9q:B 227 219 0.9952 0.9207 0.9543 2.31e-148 3t91:A, 3t91:B, 3t9q:A
2 3pu9:A 236 217 0.2333 0.2076 0.2258 5.74e-04 3pu9:B
3 8elf:B 384 87 0.1190 0.0651 0.2874 0.065 8elf:A
4 8k7p:A 382 68 0.1190 0.0654 0.3676 0.10 8k7p:B, 8k7q:A, 8k7q:B, 6ksi:A, 6ksi:B, 6ksl:A, 6ksl:B, 6ksm:A, 6ksm:B, 8s9r:A, 8s9r:B, 8yib:A, 8yib:B
5 7yq8:A 730 196 0.1952 0.0562 0.2092 0.67 7yq8:B, 5zad:A, 5zad:B, 5zen:A, 5zqf:A
6 7qix:R 150 27 0.0667 0.0933 0.5185 1.4 8auv:W, 8b2l:W1, 7qiz:HA
7 3ujk:A 298 65 0.1095 0.0772 0.3538 1.5 3nmv:B, 3ujl:B
8 3in1:A 312 21 0.0571 0.0385 0.5714 5.6 3in1:B
9 4wy0:B 260 61 0.1000 0.0808 0.3443 6.5 4wy0:D, 4wy0:E, 4wy0:G, 4wy0:I, 4wy0:J, 4wy0:K, 1znn:A, 1znn:B, 1znn:C, 1znn:D, 1znn:E, 1znn:F
10 7xf0:C 598 33 0.0714 0.0251 0.4545 9.0 7xf0:A, 7xf0:B, 7xf1:A, 7xg3:L, 7xg4:L

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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