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BioLiP
>protein
AMKVKIYTRNGCPYCVWAKQWFEENNIAFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIFIDDEHIGGFTELKANA
DKILNK

The query sequence (length=86) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3msz:B 87 86 1.0000 0.9885 1.0000 1.04e-61 3msz:A
2 3grx:A 82 75 0.3605 0.3780 0.4133 9.81e-13
3 1grx:A 85 80 0.3605 0.3647 0.3875 9.70e-12 1qfn:A
4 4tr0:A 92 84 0.3372 0.3152 0.3452 1.17e-08 4tr0:B, 4tr1:A, 4tr1:B
5 2ht9:B 111 73 0.2558 0.1982 0.3014 3.47e-06 2fls:A, 2ht9:A
6 3uiw:A 110 74 0.2326 0.1818 0.2703 5.33e-06 3uiw:B
7 4i2u:A 109 85 0.2907 0.2294 0.2941 0.001
8 3rhc:A 103 72 0.2093 0.1748 0.2500 0.003 3rhb:A, 3rhc:B
9 5w1j:A 584 83 0.2907 0.0428 0.3012 0.003 5w1j:B, 5w1l:A, 5w1l:B
10 3d5j:A 112 71 0.2326 0.1786 0.2817 0.003 3d5j:B
11 2e7p:C 115 70 0.1977 0.1478 0.2429 0.004 2e7p:A, 2e7p:B, 2e7p:D
12 3fz9:A 106 79 0.2558 0.2075 0.2785 0.005 3fza:A
13 4n11:A 108 78 0.2326 0.1852 0.2564 0.021 7din:A, 7dio:A, 7dip:A, 7diq:A
14 5kqa:A 110 68 0.1977 0.1545 0.2500 0.023
15 7f75:G 129 28 0.1395 0.0930 0.4286 0.042
16 4rqr:A 107 77 0.2326 0.1869 0.2597 0.046 1b4q:A
17 8a1r:A 593 68 0.2209 0.0320 0.2794 0.048 8a1r:B, 7b02:A, 6fmu:A, 6fmz:A, 6fp4:A, 6ftc:A, 3h4k:A, 4la1:A, 4la1:B, 7npx:A, 7npx:B, 8pdd:A, 8pdd:B, 8pl0:A, 8pl0:B, 8pl1:A, 8pl1:B, 8pl2:A, 8pl2:B, 8pl3:A, 8pl3:B, 8pl4:A, 8pl4:B, 8pl5:A, 8pl5:B, 8pl6:A, 8pl7:A, 8pl7:B, 8pl8:A, 8pl9:A, 8pl9:B, 8pla:A, 8pla:B, 8plb:A, 8plb:B, 8plc:A, 8plc:B, 8pld:A, 8pld:B, 8ple:A, 8ple:B, 8plf:A, 8plf:B, 8plg:A, 8plh:A, 8pli:A, 8pli:B, 8plj:A, 8plj:B, 8plk:A, 8plk:B, 8pll:A, 8plm:A, 8pln:A, 8plo:A, 8plo:B, 8plp:A, 8plp:B, 8plq:A, 8plq:B, 8plr:A, 8plr:B, 8pls:A, 8pls:B, 8plt:A, 8plt:B, 8plu:A, 8plu:B, 8plv:A, 8plv:B, 8plw:A, 8plw:B, 8plx:A, 8plx:B, 8ply:A, 8ply:B, 6rtj:A, 6rtm:A, 6rto:A, 2v6o:A, 2x8c:A, 2x8c:B, 2x8g:A, 2x8h:A, 2x99:A, 6zlb:A, 6zlp:A, 6zp3:A, 6zst:A
18 3ir4:A 218 45 0.1860 0.0734 0.3556 0.22
19 4kx4:A 217 37 0.1395 0.0553 0.3243 0.40 7d9l:A, 7dkp:A, 7dkp:B, 7dkp:C, 7dkp:D
20 4ags:A 445 60 0.1860 0.0360 0.2667 0.55 4ags:B, 4ags:C
21 6wmt:S 202 29 0.1279 0.0545 0.3793 0.57 6weg:D
22 2jac:A 108 19 0.1163 0.0926 0.5263 1.8 3c1s:A
23 2qdg:A 366 67 0.1860 0.0437 0.2388 1.8 2qap:A, 2qap:B, 2qap:C, 2qap:D, 2qdg:B, 2qdg:C, 2qdg:D, 2qdh:A, 2qdh:B, 2qdh:C, 2qdh:D
24 4yd9:A 1656 40 0.1512 0.0079 0.3250 2.1 4yd9:D, 4yd9:G, 4yd9:J, 4yd9:M, 4yd9:P, 4yd9:S, 4yd9:V, 4yd9:Y, 4yd9:b
25 7u2r:A 244 78 0.2209 0.0779 0.2436 2.1
26 7d0i:B 424 39 0.1512 0.0307 0.3333 2.2 7d0i:D, 7d0i:F, 7d0i:H, 7d0i:J, 7d0i:L
27 6btm:B 948 34 0.1628 0.0148 0.4118 3.1
28 3mm5:B 363 32 0.1279 0.0303 0.3438 3.2 3mm5:E, 3mm6:B, 3mm6:E, 3mm7:B, 3mm7:E, 3mm8:B, 3mm8:E, 3mm9:B, 3mm9:E, 3mma:B, 3mma:E, 3mmb:B, 3mmb:E, 3mmc:B, 3mmc:E
29 2x3j:A 586 28 0.1163 0.0171 0.3571 6.2 2w02:A, 2w02:B, 2w03:A, 2w03:B, 2w04:B, 2x3j:B, 2x3k:A, 2x3k:B
30 2w98:B 355 41 0.1163 0.0282 0.2439 7.0 2vna:A, 2w4q:A, 2w98:A, 2zb4:A, 2zb7:A, 2zb8:A
31 2br3:F 233 26 0.1279 0.0472 0.4231 7.6 2bm9:A, 2bm9:B, 2bm9:C, 2bm9:D, 2bm9:E, 2bm9:F, 2br3:B, 2br3:C, 2br3:D, 2br3:E, 2br4:A, 2br4:B, 2br4:C, 2br4:D, 2br4:E, 2br4:F, 2br5:A, 2br5:B, 2br5:C, 2br5:D, 2br5:E
32 7q2x:D 994 35 0.1279 0.0111 0.3143 8.4 7q2y:D
33 7qen:D 1050 35 0.1279 0.0105 0.3143 8.8
34 1e3d:B 537 22 0.1163 0.0186 0.4545 8.9 1e3d:D
35 2wul:A 109 54 0.1744 0.1376 0.2778 9.7 2wul:B, 2wul:C, 2wul:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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