Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
AMKTPVSILQELLSRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKHAAARALIDKLITQHSNK
VSQFHKTLKNATGKKLLKLQKTCLKNNKIDYIKLLGEIATENQFEVTYVDIEEKTFSGQFQCLVQLSTLPVGVCHGSGPT
AADAQRHAAQNALEYLKIMTKK

The query sequence (length=182) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8dga:K 182 182 1.0000 1.0000 1.0000 7.62e-136 8dg7:K
2 8dfv:K 253 182 0.7308 0.5257 0.7308 2.98e-85 8dg5:K
3 8dfv:K 253 74 0.4066 0.2925 1.0000 1.43e-47 8dg5:K
4 7zpk:C 233 219 0.4121 0.3219 0.3425 3.58e-26 3adl:A, 5n8l:A, 5n8m:A
5 4wyq:B 75 67 0.1978 0.4800 0.5373 1.66e-15 4wyq:E
6 6sdw:A 177 179 0.2637 0.2712 0.2682 1.17e-05 6htu:A, 6htu:B, 6htu:C, 6sdy:A
7 1yyk:A 221 65 0.1319 0.1086 0.3692 2.59e-04 2ez6:A, 2ez6:B, 1jfz:A, 1jfz:B, 1jfz:C, 1jfz:D, 4m2z:A, 4m2z:B, 4m30:A, 4m30:B, 2nue:A, 2nuf:A, 2nuf:B, 2nug:A, 2nug:B, 1rc5:A, 1rc5:B, 1rc5:C, 1rc5:D, 1rc7:A, 1yyo:A, 1yyw:A, 1yyw:C, 1yz9:A
8 3vyy:A 86 68 0.0934 0.1977 0.2500 0.036 3vyy:B
9 7zlq:B 82 74 0.1209 0.2683 0.2973 0.037 7zlq:A
10 7v6c:B 260 97 0.1538 0.1077 0.2887 0.21
11 9asp:C 92 88 0.1429 0.2826 0.2955 0.32
12 7yop:B 304 99 0.1264 0.0757 0.2323 0.43 8grw:A, 8grw:B, 7yop:A, 7ysz:A, 7ysz:B
13 7r97:A 226 57 0.0989 0.0796 0.3158 0.43 7r97:B
14 6v5b:C 217 73 0.1319 0.1106 0.3288 2.9 6v5b:B, 6v5c:C, 6v5c:B
15 9asp:B 250 73 0.1319 0.0960 0.3288 3.1 9asm:B, 9asn:B, 9asq:B
16 2l3j:A 236 68 0.1374 0.1059 0.3676 4.9 2l3c:A
17 7z0s:D 306 21 0.0604 0.0359 0.5238 5.3
18 5z87:A 756 97 0.1374 0.0331 0.2577 5.5 5z87:B
19 5cd4:I 494 66 0.0769 0.0283 0.2121 6.3 5cd4:U, 5h9e:A, 5h9f:A, 4tvx:I, 4tvx:U, 4u7u:M
20 8vig:A 436 53 0.0824 0.0344 0.2830 8.3
21 1am9:C 82 60 0.1154 0.2561 0.3500 8.7 1am9:D, 1am9:A, 1am9:B

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218