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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AMGSMAEAEGESLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNC
GRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPEEAKIKDAYHMLKRQGIVQSDPPIPVDRTL
I

The query sequence (length=161) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1jpl:A 161 161 1.0000 1.0000 1.0000 2.02e-120 1jpl:B, 1jpl:C, 1jpl:D, 1juq:A, 1juq:B, 1juq:C, 1juq:D, 1lf8:A, 1lf8:B, 1lf8:C, 1lf8:D
2 3g2s:A 146 142 0.6398 0.7055 0.7254 5.76e-77 3g2s:B, 3g2t:A, 3g2t:B, 3g2u:A, 3g2u:B, 3g2v:A, 3g2v:B, 3g2w:A, 3g2w:B, 1jwg:A, 1jwg:B, 1py1:A, 1py1:B, 1py1:C, 1py1:D, 1ujj:A, 1ujk:A, 1ujk:B
3 4avx:A 218 156 0.2919 0.2156 0.3013 1.14e-14 3zyq:A
4 1dvp:A 217 133 0.2733 0.2028 0.3308 3.83e-13
5 6ohb:A 435 29 0.0994 0.0368 0.5517 0.51 6ohb:B, 6ohb:C, 6ohb:D, 6ohc:A, 6ohc:B, 6ohc:C, 6ohc:D
6 6c94:A 482 48 0.0932 0.0311 0.3125 2.0 6c93:A, 5t6q:A
7 6bni:A 502 45 0.0932 0.0299 0.3333 2.7 6bni:B, 6c86:A, 6c86:B, 5eln:A, 5eln:B, 5eln:C, 5eln:D, 5elo:A, 5elo:B, 5elo:C, 5elo:D, 6hcw:A, 6hcw:B, 7zog:A, 7zog:B, 7zog:C, 7zog:D
8 4do4:B 400 73 0.1056 0.0425 0.2329 4.4 4do4:A, 4do5:A, 4do5:B, 4do6:A, 4do6:B, 3h55:A, 3h55:B, 3igu:A, 3igu:B
9 5gj3:A 270 45 0.0932 0.0556 0.3333 7.2 5y8b:A
10 8b6h:DD 558 53 0.0994 0.0287 0.3019 8.9 8b6h:Dd, 8bqs:DD, 8bqs:Dd, 8gym:vb, 8gym:VB, 8gzu:29, 8gzu:84, 8gzu:vb, 8gzu:VB, 7w5z:5B, 7w5z:5b
11 7lar:D 183 54 0.0932 0.0820 0.2778 9.5 7lar:E, 7lar:A, 7lar:B, 7lar:C, 7las:D, 7las:E, 7las:A, 7las:B, 7las:C
12 6sl1:A 2652 33 0.0683 0.0041 0.3333 9.6 6sky:A, 6sky:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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