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BioLiP
>protein
AMDKSAKAPQITIFDHRGCSRAPKESTGGKAGGQDDEMMVKVASTKVTVSESDAAKKLQEFITFEKGIDGPFTSKN

The query sequence (length=76) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1qgw:A 76 76 1.0000 1.0000 1.0000 1.67e-51 1xf6:A, 1xg0:A
2 7tja:I 75 75 0.7763 0.7867 0.7867 5.80e-34 7tja:A, 7tja:R, 7tja:E, 7tja:M, 7tlf:A, 7tlf:E, 7tlf:I, 7tlf:M
3 7t8s:B 78 77 0.6316 0.6154 0.6234 2.53e-26 7t8s:F, 7t8s:J, 7t8s:N
4 7tja:G 67 64 0.5658 0.6418 0.6719 3.30e-25 7tja:Q, 7tja:C, 7tja:K, 7tja:O, 7tlf:C, 7tlf:G, 7tlf:K, 7tlf:O
5 1qgw:B 67 54 0.5526 0.6269 0.7778 1.29e-24 1xf6:B, 1xg0:B
6 7t7u:A 81 62 0.4342 0.4074 0.5323 1.51e-16
7 7t8s:D 70 65 0.4737 0.5143 0.5538 3.90e-16 7t8s:H, 7t8s:L, 7t8s:P
8 4lms:A 80 60 0.3947 0.3750 0.5000 5.04e-14
9 7t7u:C 70 64 0.3816 0.4143 0.4531 8.92e-11
10 7sut:A 78 64 0.4079 0.3974 0.4844 1.24e-10 7sut:E
11 4lms:C 68 67 0.4079 0.4559 0.4627 1.89e-10
12 7sut:C 63 58 0.3421 0.4127 0.4483 2.55e-09 7sut:G
13 7ssf:A 72 71 0.3158 0.3333 0.3380 1.68e-04 7ssf:C, 7ssf:E, 7ssf:G
14 7s96:A 63 48 0.2763 0.3333 0.4375 0.004 7s96:C, 7s97:C, 7t89:A, 7t89:C
15 4lmx:C 66 62 0.2632 0.3030 0.3226 0.011 8el3:A, 8el3:J, 8el3:G, 8el3:K, 8el4:A, 8el4:F, 8el5:A, 8el5:J, 8el5:K, 8el5:G, 8el6:A, 8el6:F
16 4lmx:E 66 64 0.2632 0.3030 0.3125 0.018 8el3:C, 8el3:I, 8el3:E, 8el3:L, 8el4:C, 8el4:E, 8el5:C, 8el5:I, 8el5:E, 8el5:L, 8el6:C, 8el6:E, 4lmx:A, 4lmx:G, 4lmx:I, 4lmx:K
17 3ibg:A 300 38 0.1974 0.0500 0.3947 0.61 3ibg:B, 3ibg:C, 3ibg:D, 3ibg:E, 3ibg:F
18 3kfe:A 487 59 0.2237 0.0349 0.2881 2.0 3kfe:B, 3kfe:C, 3kfe:D, 3kfe:E, 3kfe:F, 3kfe:G, 3kfe:H, 3kfk:A, 3kfk:B, 3kfk:C, 3kfk:D, 5w74:A, 5w74:B, 5w74:C, 5w74:D, 5w74:E, 5w74:F, 5w74:G, 5w74:H
19 3ruq:A 516 59 0.2237 0.0329 0.2881 2.0 3kfb:A, 3kfb:B, 3kfb:C, 3kfb:D, 3kfb:E, 3kfb:F, 3kfb:G, 3kfb:H, 7rak:U, 7rak:A, 7rak:B, 7rak:C, 7rak:D, 7rak:E, 7rak:F, 7rak:G, 7rak:H, 7rak:I, 7rak:J, 7rak:K, 7rak:L, 7rak:M, 7rak:N, 7rak:O, 3ruq:B, 3ruq:C, 3ruq:D, 3rus:A, 3rus:B, 3rus:C, 3rus:D, 3ruv:A, 3ruv:B, 3ruv:C, 3ruv:D, 3ruw:A, 3ruw:B, 3ruw:C, 3ruw:D
20 4lm6:A 62 53 0.2105 0.2581 0.3019 3.4 4lm6:C
21 7o9m:d 220 29 0.1053 0.0364 0.2759 7.0 7a5h:d, 7a5j:d, 6i9r:d, 7of0:d, 7of2:d, 7of3:d, 7of4:d, 7of5:d, 7of6:d, 7of7:d, 7og4:d, 7oi6:d, 7oi7:d, 7oi8:d, 7oi9:d, 7oia:d, 7oib:d, 7oid:d, 7oie:d, 5ool:d, 5oom:d, 7pd3:d, 8qu5:d, 6zs9:d, 6zsa:d, 6zsb:d, 6zsc:d, 6zsd:d, 6zse:d, 6zsg:d

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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