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BioLiP
>protein
AMDIVFIEELSVITTIGVYDWEQTIQQKLVFDIEMGWDNRKAAGSDDVNDCLSFADISEAVIQHVGSQRFALVERVAEEV
AELLLRRFNSPWVRIKVSKPGAVAQAKNVGVIIERGQ

The query sequence (length=117) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7su7:D 119 117 0.9915 0.9748 0.9915 3.04e-82 6ojo:A, 6ojo:C, 6ojo:B, 6ojo:D, 7su4:A, 7su4:D, 7su4:B, 7su4:C, 7su6:A, 7su6:C, 7su6:B, 7su6:D, 7su7:B, 7su7:A, 7su7:C, 7su8:A, 7su8:B
2 2o90:A 115 115 0.8376 0.8522 0.8522 7.31e-69
3 5f3m:A 120 114 0.2564 0.2500 0.2632 3.97e-09 5f3m:B, 5far:A, 5far:B, 5far:C, 5far:D, 5far:E, 5far:H, 5far:F, 5far:G, 8sv5:A, 8sv5:G, 8sv5:B, 8sv5:H, 8sv5:C, 8sv5:D, 8sv5:F, 8sv5:E
4 1nbu:A 118 117 0.2906 0.2881 0.2906 3.96e-07 1nbu:D, 1nbu:B, 1nbu:C, 1nbu:E, 1nbu:H, 1nbu:F, 1nbu:G
5 4xeq:B 304 34 0.1197 0.0461 0.4118 1.1 4xeq:A, 4xeq:C, 4xeq:D
6 8evk:A 115 96 0.1538 0.1565 0.1875 1.3
7 7u5a:A 323 54 0.1538 0.0557 0.3333 1.6 7u1o:A, 7u1o:B, 7u5a:B, 7u91:A, 7u91:B, 7ulc:A, 7ulc:B
8 7qoe:A 187 40 0.1026 0.0642 0.3000 5.2
9 8bqa:AAA 298 70 0.1453 0.0570 0.2429 6.5
10 3ivd:A 499 38 0.0940 0.0220 0.2895 7.7 3ivd:B, 3ive:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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