Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
AMARGVNKVILIGNLGDDPELRYTGSGTAVCNMSLATNETNTEWHDVVAWGRLGEICNEYLDKGSQVYFEGKLQTRSWED
RDNNTRYSTEVKAQEMMFL

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5odn:D 106 100 1.0000 0.9340 0.9900 6.91e-70 5odn:F, 5odn:G, 5odn:B, 5odn:C, 5odn:A, 5odn:E, 5odn:H
2 5odp:G 100 107 0.8384 0.8300 0.7757 1.05e-51 5odp:A
3 1eqq:B 120 100 0.5556 0.4583 0.5500 1.64e-34 1eqq:A, 1eyg:A, 1eyg:B, 1eyg:C, 1eyg:D
4 6irq:C 104 94 0.5455 0.5192 0.5745 1.20e-31 6irq:A, 6irq:B, 6irq:D, 6jdg:C, 6jdg:A, 6jdg:B, 6jdg:D, 7vum:A, 7vum:C, 5yun:B, 5yun:A, 5yun:D
5 6bhx:C 102 96 0.4040 0.3922 0.4167 1.11e-20 6bhx:A, 6bhx:B
6 8gw5:A 99 95 0.3535 0.3535 0.3684 7.92e-17 7ym1:A
7 7dep:B 102 102 0.3939 0.3824 0.3824 6.17e-16
8 3ulp:C 116 100 0.3232 0.2759 0.3200 2.62e-15 3ulp:A, 3ulp:B, 3ulp:D
9 6rup:A 111 110 0.3636 0.3243 0.3273 4.27e-15 6rup:B, 8uzt:A, 8uzt:C, 8uzt:D
10 2vw9:A 108 103 0.3636 0.3333 0.3495 1.93e-14 2vw9:B
11 3vdy:A 101 101 0.3737 0.3663 0.3663 2.81e-14 3vdy:B
12 3udg:C 214 100 0.4242 0.1963 0.4200 1.62e-13 3udg:B, 3udg:A
13 3udg:C 214 84 0.3030 0.1402 0.3571 1.34e-08 3udg:B, 3udg:A
14 8uzt:B 100 105 0.3434 0.3400 0.3238 9.50e-12
15 3a5u:A 118 104 0.3636 0.3051 0.3462 1.27e-11 3a5u:B
16 5t7e:D 175 49 0.1616 0.0914 0.3265 0.53 5t7d:A, 5t7d:B, 5t7d:C, 5t7d:D, 5t7e:A, 5t7e:B, 5t7e:C
17 6iun:B 692 36 0.1111 0.0159 0.3056 0.81 6iun:A
18 5gqo:A 97 57 0.1818 0.1856 0.3158 2.4
19 7suk:6 277 28 0.1010 0.0361 0.3571 4.0 7d63:RB, 6ke6:RB, 6lqp:RB, 6lqq:RB, 6lqr:RB, 6lqu:RB, 6lqv:RB, 5wlc:NC, 6zqb:JE
20 6l1x:A 708 38 0.1313 0.0184 0.3421 5.6
21 6l3h:A 741 38 0.1313 0.0175 0.3421 5.6 6l3h:B
22 4rku:G 84 16 0.0909 0.1071 0.5625 5.7
23 5zji:G 97 16 0.0909 0.0928 0.5625 5.9
24 7bcb:B 97 24 0.1010 0.1031 0.4167 8.2 7bca:A, 7bca:B, 7bcb:A

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218