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BioLiP
>protein
AMAKGVGVSNEKLDAVMRVVSEESGIALEELTDDSNFADMGIDSLSSMVIGSRFREDLGLDLGPEFSLFIDCTTVRALKD
FMLGSGDAG

The query sequence (length=89) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2kr5:A 89 89 1.0000 1.0000 1.0000 1.54e-58
2 8cg6:C 75 63 0.3596 0.4267 0.5079 7.58e-16
3 5hv8:A 95 54 0.2022 0.1895 0.3333 2.83e-04
4 2vsq:A 1273 84 0.2472 0.0173 0.2619 0.013
5 8odw:A 612 67 0.1685 0.0245 0.2239 0.028 8odw:B
6 2eht:A 77 53 0.1685 0.1948 0.2830 0.067
7 2fq1:A 279 28 0.1236 0.0394 0.3929 0.34
8 3rg2:C 613 28 0.1236 0.0179 0.3929 0.37 6iyk:A, 6iyk:B, 6iyl:A, 6iyl:B, 4iz6:A, 4iz6:B, 8k5s:A, 8k5s:B, 8k5t:A, 8k5t:B, 3rg2:A, 3rg2:B, 3rg2:H, 3rg2:D, 3rg2:E, 3rg2:F, 3rg2:I, 3rg2:G, 3rg2:J
9 7aib:C 267 40 0.1348 0.0449 0.3000 0.71 7aic:C
10 6kfu:A 527 64 0.1573 0.0266 0.2188 0.83 6kfm:A, 6kfm:B, 6kfr:A, 6kfr:B
11 8g3i:B 515 34 0.1461 0.0252 0.3824 1.1
12 8b37:B 681 31 0.1348 0.0176 0.3871 1.1 8b37:A
13 8bee:U 87 53 0.1798 0.1839 0.3019 1.2 7aqr:U, 7arb:U, 8bpx:U, 8bq5:U, 8bq6:U
14 6tix:BBB 533 42 0.2022 0.0338 0.4286 1.7 6tix:AAA
15 6ltb:A 928 34 0.1348 0.0129 0.3529 4.5 6ltc:A, 6ltd:A, 6ltd:B
16 2qnw:A 80 54 0.1910 0.2125 0.3148 4.7
17 2liw:A 99 59 0.1573 0.1414 0.2373 5.6
18 7ut5:A 324 47 0.1573 0.0432 0.2979 5.7 7ut5:B
19 7orj:A 2129 29 0.1461 0.0061 0.4483 6.2
20 2koo:A 81 46 0.1685 0.1852 0.3261 7.1 2kop:A, 2koq:A, 2kor:A, 2kos:A
21 1gud:A 288 34 0.1461 0.0451 0.3824 10.0 1rpj:A, 8wl7:A, 8wl9:A, 8wlb:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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