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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
AMAHVTLQSLSNNDLCLDVYGENGDKTVAGGSVNGWSCHGSWNQVWGLDKEERYRSRVASDRCLTVNADKTLTVEQCGAN
LAQKWYWEGDKLISRYVDGNNTRYLLNIVGGRNVQVTPENEANQARWKPTLQQVKL

The query sequence (length=136) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4owl:D 137 136 1.0000 0.9927 1.0000 5.71e-99 4owj:A, 4owj:B, 4owj:C, 4owj:D, 4owj:E, 4owj:F, 4owj:G, 4owk:A, 4owk:B, 4owk:C, 4owk:D, 4owk:E, 4owk:F, 4owk:G, 4owl:B, 4owl:C, 4owl:E, 4owl:F, 4owl:A, 4owl:G
2 1rzo:B 262 57 0.1544 0.0802 0.3684 0.003 1rzo:D
3 1rzo:B 262 60 0.1397 0.0725 0.3167 4.1 1rzo:D
4 8v9q:A 500 82 0.1691 0.0460 0.2805 0.022 1xhb:A
5 4d0t:A 496 82 0.1691 0.0464 0.2805 0.41 5ajn:A, 5ajo:A, 5ajp:A, 4d0t:C, 4d0t:F, 4d0t:B, 4d0t:D, 4d0t:E, 4d0z:B, 4d0z:E, 4d0z:A, 4d0z:C, 4d0z:D, 4d0z:F, 4d11:D, 4d11:E, 4d11:B, 4d11:A, 4d11:F, 6e7i:A, 6egs:A, 6egs:B, 2ffu:A, 2ffv:A, 2ffv:B, 5fv9:A, 5fv9:B, 5fv9:C, 5fv9:D, 5fv9:E, 5fv9:F, 5ndf:A, 5ndf:B, 5ndf:C, 5ndf:D, 5ndf:E, 5ndf:F, 6nqt:A, 6nqt:B, 6nqt:C, 6nqt:D, 6nqt:E, 6nqt:F
6 2zqn:A 131 46 0.1029 0.1069 0.3043 0.57 2drz:A, 2drz:B, 2ds0:A, 2ds0:B, 2zqn:B, 2zqo:A, 2zqo:B
7 1onk:B 263 69 0.1691 0.0875 0.3333 1.3 3d7w:B, 1oql:B, 1pum:B, 1puu:B, 2r9k:B, 2rg9:B, 1sz6:B, 1tfm:B, 1yf8:B
8 3ca1:A 257 77 0.1618 0.0856 0.2857 1.5 3ca4:A, 3ca5:A, 3cah:A
9 6epz:C 673 80 0.1838 0.0371 0.3125 3.6 6epy:A, 6epy:B, 6epy:C, 6epy:D, 6epz:A, 6epz:D, 6epz:B, 6eq0:A, 6eq0:B, 6eq1:A, 6eq1:B, 6eq8:D, 6eq8:B, 6eq8:C, 6eq8:A
10 6ifb:B 135 96 0.1838 0.1852 0.2604 3.7 6ifb:A
11 4end:A 114 68 0.1471 0.1754 0.2941 4.0 4den:A, 4g1r:A, 4g1r:C, 4p6a:A
12 2xe4:A 721 73 0.1691 0.0319 0.3151 4.1
13 1hwm:B 264 89 0.1691 0.0871 0.2584 4.4 1hwn:B, 1hwo:B, 1hwp:B
14 3ssn:B 350 43 0.1029 0.0400 0.3256 5.1
15 6hiv:Cd 291 21 0.0809 0.0378 0.5238 5.2 6hiw:Cd, 6hiy:Cd, 7pua:Cd, 7pub:Cd, 6sga:Cd, 6sgb:Cd
16 3a22:A 614 79 0.1838 0.0407 0.3165 5.3 3a22:B, 3a23:A, 3a23:B
17 3orq:A 373 67 0.1029 0.0375 0.2090 5.7 3orq:B
18 1knm:A 129 125 0.2868 0.3023 0.3120 6.3 1mc9:A
19 2zoq:A 352 28 0.0809 0.0312 0.3929 7.9 6ges:A, 6ges:B, 4qtb:A, 4qtb:B, 2zoq:B
20 1isv:A 436 100 0.2279 0.0711 0.3100 9.0 2d20:A, 2d20:B, 2d22:A, 2d22:B, 2d23:A, 2d23:B, 2d24:A, 2d24:B, 1e0v:A, 1e0x:A, 1e0x:B, 2g3j:A, 5gqd:A, 5gqd:B, 5gqe:A, 5gqe:B, 1isv:B, 1isw:A, 1isw:B, 1isx:A, 1isx:B, 1isy:A, 1isy:B, 1isz:A, 1isz:B, 1it0:A, 1it0:B, 1od8:A, 1v0k:A, 1v0l:A, 1v0m:A, 1v0n:A, 1v6u:A, 1v6u:B, 1v6v:A, 1v6v:B, 1v6w:A, 1v6w:B, 1v6x:A, 1v6x:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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