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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
ALYINDDCTACDACVEECPNEAITPGDPIYVIDPTKCSECVGAFDEPQCRLVCPADCIPDNPDYRETREELQEKYDRLHG

The query sequence (length=80) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1rgv:A 80 80 1.0000 1.0000 1.0000 5.28e-54
2 2fgo:A 81 80 0.5500 0.5432 0.5500 2.48e-26
3 3eun:A 81 80 0.5125 0.5062 0.5125 5.50e-24 1blu:A, 3exy:A
4 2zvs:A 81 80 0.4750 0.4691 0.4750 1.54e-19 2zvs:B, 2zvs:C
5 1clf:A 55 54 0.3000 0.4364 0.4444 5.10e-07
6 1fca:A 55 56 0.3000 0.4364 0.4286 1.50e-05 1fdn:A, 2fdn:A
7 1f2g:A 58 42 0.2500 0.3448 0.4762 6.75e-04 1fxd:A
8 1dur:A 55 54 0.3000 0.4364 0.4444 7.81e-04
9 7zc6:B 202 34 0.2000 0.0792 0.4706 0.003
10 7zc6:B 202 62 0.2125 0.0842 0.2742 0.39
11 7zc6:B 202 19 0.1250 0.0495 0.5263 2.9
12 8qby:I 159 79 0.3625 0.1824 0.3671 0.006
13 7arc:I 199 77 0.3500 0.1407 0.3636 0.009 7ard:I
14 7ak5:I 178 86 0.3750 0.1685 0.3488 0.016 7ak6:I, 7b93:I, 8c2s:I, 8ca3:I, 8ca5:I, 7dgq:E, 7dgr:E, 7dgs:E, 7dgz:E, 7dh0:E, 7dkf:E2, 6g2j:I, 6g72:I, 5gpn:b, 5gup:H, 8iao:I, 8iap:I, 8ib4:I, 8ib5:I, 8ib9:I, 8iba:I, 8ibd:I, 8ibe:I, 8ic2:I, 8ic3:I, 5lc5:I, 5ldw:I, 5ldx:I, 5lnk:9, 5o31:I, 8olt:I, 8om1:I, 7psa:I, 8pw5:9, 8pw6:9, 8pw7:9, 8q0a:I, 8q0f:I, 8q0j:I, 8q0m:I, 8q0o:I, 8q0q:I, 8q1p:I, 8q1u:I, 8q1y:I, 8q25:I, 8q45:I, 8q46:I, 8q47:I, 8q48:I, 8q49:I, 8q4a:I, 6q9d:S8, 6qa9:S8, 6qbx:S8, 6qc2:S8, 6qc3:S8, 6qc4:S8, 6qc5:S8, 6qc6:S8, 6qc7:S8, 6qc8:S8, 6qc9:S8, 6qca:S8, 6qcf:S8, 7qsd:I, 7qsk:I, 7qsl:I, 7qsm:I, 7qsn:I, 7qso:I, 7r41:I, 7r42:I, 7r43:I, 7r44:I, 7r45:I, 7r46:I, 7r47:I, 7r48:I, 7r4c:I, 7r4d:I, 7r4f:I, 7r4g:I, 8rgp:9, 8rgq:9, 8rgr:9, 8rgt:9, 8ud1:1I, 8ueo:1I, 8uep:1I, 8ueq:1I, 8uer:1I, 8ues:1I, 8uet:1I, 8ueu:1I, 8uev:1I, 8uew:1I, 8uex:1I, 8uey:1I, 8uez:1I, 8ugh:1I, 8ugi:1I, 8ugj:1I, 8ugn:1I, 8ugn:5I, 8ugp:1I, 8ugr:1I, 8ugr:5I, 7v2c:B, 7v2d:B, 7v2e:B, 7v2f:B, 7v2h:B, 7v2k:B, 7v2r:B, 7v30:B, 7v31:B, 7v32:B, 7v33:B, 7v3m:B, 7vb7:B, 7vbn:B, 7vbz:B, 7vwj:B, 7vxp:B, 7vxu:B, 7vy8:B, 7vya:B, 7vyf:B, 7vyh:B, 7vyn:B, 7vz1:B, 7vzv:B, 7vzw:B, 7w00:B, 7w0h:B, 7w0r:B, 7w0y:B, 7w1o:B, 7w1p:B, 7w1t:B, 7w1u:B, 7w1v:B, 7w1z:B, 7w20:B, 7w2k:B, 7w2l:B, 7w2r:B, 7w2u:B, 7w2y:B, 7w31:B, 7w32:B, 7w35:B, 7w4c:B, 7w4d:B, 7w4e:B, 7w4f:B, 7w4g:B, 7w4j:B, 7w4k:B, 7w4l:B, 7w4m:B, 7w4n:B, 7w4q:B, 5xtb:B, 5xtd:B, 5xth:B, 5xti:B, 5xti:BB, 7zd6:9, 7zdh:9, 7zdj:9, 7zdm:9, 7zdp:9, 7zeb:9, 6zk9:9, 6zkc:9, 6zkd:9, 6zke:9, 6zkf:9, 6zkg:9, 6zkh:9, 6zki:9, 6zkj:9, 6zkk:9, 6zkl:9, 6zkm:9, 6zkn:9, 6zko:9, 6zkp:9, 6zkq:9, 6zkr:9, 6zks:9, 6zkt:9, 6zku:9, 6zkv:9, 6zr2:I, 6ztq:I
15 8b9z:I 186 86 0.3500 0.1505 0.3256 0.018 8ba0:I, 8esw:S8, 8esz:S8
16 7bkc:K 321 74 0.3125 0.0779 0.3378 0.025 7bkc:k
17 7bkc:K 321 62 0.2750 0.0685 0.3548 3.2 7bkc:k
18 7bkb:K 386 74 0.3125 0.0648 0.3378 0.028 7bkb:k, 7bkc:M, 7bkc:m
19 7bkb:K 386 62 0.2750 0.0570 0.3548 3.7 7bkb:k, 7bkc:M, 7bkc:m
20 8e73:S8 181 79 0.3500 0.1547 0.3544 0.029 7a23:D, 7a24:D, 7aqr:I, 7ar7:I, 7ar8:I, 7arb:I, 8bee:I, 8bpx:I, 8bq5:I, 8bq6:I, 6x89:S8
21 8b6f:AL 218 70 0.3250 0.1193 0.3714 0.037 8bqs:AL, 8gym:s8, 8gym:S8, 8gzu:s8, 8gzu:S8, 7tgh:S8
22 7b0n:I 191 86 0.3625 0.1518 0.3372 0.065 6gcs:I, 7o6y:I, 7o71:I, 6rfq:I, 6rfr:I, 6rfs:I, 6y79:I, 6yj4:I
23 1h98:A 77 69 0.3000 0.3117 0.3478 0.069
24 7p8n:B 613 37 0.2125 0.0277 0.4595 0.071 7p5h:B, 7p5h:E, 7p5h:b, 7p5h:e, 7p8n:b, 7p91:b, 7p91:B, 7p92:B
25 7zm7:I 185 86 0.3750 0.1622 0.3488 0.074 7zmb:I, 7zmg:I
26 1a6l:A 106 80 0.3125 0.2358 0.3125 0.088 1axq:A, 1b0t:A, 1b0v:A, 1b0v:B, 1b0v:C, 1b0v:D, 1d3w:A, 1f5b:A, 1f5c:A, 1fd2:A, 1fda:A, 1fdb:A, 1fdd:A, 2fd2:A, 5fd1:A, 6fd1:A, 6fdr:A, 7fd1:A, 7fdr:A, 1fer:A, 1ff2:A, 1frh:A, 1fri:A, 1frj:A, 1frk:A, 1frl:A, 1frm:A, 1frx:A, 1ftc:A, 1ftc:B, 1g3o:A, 1g6b:A, 1gao:A, 1gao:B, 1gao:C, 1gao:D, 1pc4:A, 1pc5:A
27 1bc6:A 77 46 0.2500 0.2597 0.4348 0.089 1bd6:A, 1bqx:A, 1bwe:A
28 8oh5:B 584 55 0.2250 0.0308 0.3273 0.11 8oh5:E, 8oh5:H, 8oh5:K, 8oh9:B, 8oh9:E, 8oh9:H, 8oh9:K
29 6zxu:A 701 43 0.1875 0.0214 0.3488 0.19 4ras:A, 4ras:B, 4ras:C, 6zxu:B, 6zxu:C, 6zxx:A, 6zxx:B, 6zxx:C, 6zy0:A, 6zy0:B, 6zy0:C, 6zy1:A, 6zy1:B, 6zy1:C
30 7vzg:B 76 56 0.2250 0.2368 0.3214 0.27
31 7bkd:A 664 62 0.2250 0.0271 0.2903 0.30 7bkb:A, 7bkb:a, 7bkc:A, 7bkc:a, 7bkd:a, 7bke:A, 7bke:a
32 2v2k:A 104 46 0.2375 0.1827 0.4130 0.32 2v2k:B
33 6tmf:d 582 19 0.1125 0.0155 0.4737 0.43 3ozx:A, 3ozx:B
34 8ahx:B 113 59 0.2125 0.1504 0.2881 0.58 8rb8:B, 8rb9:B, 8rbq:B
35 6fah:E 393 51 0.1875 0.0382 0.2941 0.69 6fah:A
36 6fah:E 393 40 0.1875 0.0382 0.3750 0.87 6fah:A
37 7q4v:B 599 36 0.1750 0.0234 0.3889 0.77 8a5e:B, 7q4v:F, 7q4w:B, 7q4w:F
38 7plm:A 1177 23 0.1000 0.0068 0.3478 0.81 7plm:B
39 1b0p:A 1231 23 0.1000 0.0065 0.3478 0.83 1b0p:B, 2c3m:A, 2c3m:B, 2c3o:A, 2c3o:B, 2c3p:A, 2c3p:B, 2c3u:A, 2c3u:B, 2c3y:A, 2c3y:B, 2c42:A, 2c42:B, 1kek:A, 1kek:B, 2pda:A, 2pda:B, 2uza:A, 2uza:B
40 6tg9:A 949 21 0.1000 0.0084 0.3810 1.0 6tg9:E, 6tga:A, 6tga:E
41 8jjr:c 86 77 0.2750 0.2558 0.2857 1.0 8jw0:c, 8jze:c, 8jzf:c
42 3rsb:B 185 43 0.2125 0.0919 0.3953 1.1 3rsb:A, 3rsb:C, 3rsb:D
43 8q4h:A 503 43 0.1375 0.0219 0.2558 1.1 8q4h:B
44 6axe:A 729 24 0.1250 0.0137 0.4167 1.2 6axe:B
45 7z0s:F 164 65 0.2250 0.1098 0.2769 1.4 7z0t:F
46 6h8k:I 137 65 0.2750 0.1606 0.3385 1.5
47 2vpw:F 193 52 0.2125 0.0881 0.3269 1.5 2vpw:B, 2vpx:F, 2vpx:B, 2vpy:F, 2vpy:B, 2vpz:F, 2vpz:B
48 5t61:L 348 75 0.2625 0.0603 0.2800 1.5 5t5i:F, 5t5i:N, 5t5m:F, 5t61:F, 5t61:R, 5t61:X, 5t61:d, 5t61:j, 5t61:p, 5t61:v
49 8a6t:B 630 36 0.1750 0.0222 0.3889 1.7 8a6t:E, 8bew:B, 8bew:E
50 8a6t:B 630 22 0.1250 0.0159 0.4545 8.5 8a6t:E, 8bew:B, 8bew:E
51 4ur3:A 458 23 0.1250 0.0218 0.4348 1.8 5m2g:A, 5m2g:B, 5m8u:A, 5m8u:B, 5m8w:A, 5m8w:B, 5m8x:A, 5m8x:B, 5m8y:A, 5m8y:B, 5m8z:A, 5m8z:B, 5m90:A, 5m90:B, 5m91:A, 5m91:B, 5m92:A, 5m92:B, 5ma0:A, 5ma0:B, 5ma1:A, 5ma1:B, 5ma2:A, 5ma2:B, 5maa:A, 5maa:B, 5obi:A, 5obi:B, 5obp:A, 5obp:B, 4uqu:A, 4uqu:B, 4ur0:A, 4ur0:B, 4ur1:A, 4ur1:B, 4ur2:A, 4ur2:B, 4ur3:B, 4ur3:C, 4ur3:D, 4ur3:E, 4ur3:F
52 5ch7:B 329 41 0.2250 0.0547 0.4390 2.4 5ch7:D, 5ch7:F, 5chc:B, 5chc:D, 5chc:F, 5e7o:B, 5e7o:D, 5e7o:F, 5e7o:H, 5e7o:J, 5e7o:L, 4ydd:B, 4ydd:D, 4ydd:F
53 6f32:A 434 14 0.1125 0.0207 0.6429 2.7 6f32:B, 6f7l:A, 6f7l:B, 6f7v:A, 6f7v:B, 6fjh:A, 6fjh:B
54 3ml1:A 799 52 0.2250 0.0225 0.3462 2.9 3o5a:A
55 4ex4:A 684 25 0.1250 0.0146 0.4000 3.2
56 4ex4:B 721 25 0.1250 0.0139 0.4000 3.2
57 6cin:B 1169 20 0.1000 0.0068 0.4000 4.1 6cin:A, 6cin:C, 6cin:D, 6cin:E, 6cin:F, 6cio:A, 6cio:B, 6cio:C, 6cio:D, 6cio:E, 6cio:F, 6cip:A, 6cip:B, 6cip:C, 6cip:D, 6cip:E, 6cip:F, 6ciq:A, 6ciq:B, 6ciq:C
58 6cin:B 1169 13 0.0875 0.0060 0.5385 8.4 6cin:A, 6cin:C, 6cin:D, 6cin:E, 6cin:F, 6cio:A, 6cio:B, 6cio:C, 6cio:D, 6cio:E, 6cio:F, 6cip:A, 6cip:B, 6cip:C, 6cip:D, 6cip:E, 6cip:F, 6ciq:A, 6ciq:B, 6ciq:C
59 3gyx:B 166 36 0.1750 0.0843 0.3889 4.3 3gyx:D, 3gyx:F, 3gyx:H, 3gyx:J, 3gyx:L
60 6tyb:G 345 20 0.1125 0.0261 0.4500 4.7 3fus:A
61 4wnr:A 323 23 0.1250 0.0310 0.4348 5.3
62 4p0q:B 284 65 0.2250 0.0634 0.2769 5.7 4p0r:B, 4p0r:D, 4p0s:B, 4p0s:H, 4p0s:F, 4p0s:D
63 7np8:B 620 25 0.1125 0.0145 0.3600 6.0 7np8:A, 7np8:C, 7np8:D
64 7z6q:B 123 70 0.2000 0.1301 0.2286 6.5 8gwa:B, 6m32:B
65 7t30:A 666 37 0.1500 0.0180 0.3243 6.8 7t2r:A, 7t2r:F, 7t30:F
66 1esd:A 302 66 0.2250 0.0596 0.2727 7.1
67 5l9w:b 649 24 0.1125 0.0139 0.3750 7.4
68 8bc0:B 636 16 0.0875 0.0110 0.4375 7.4 6p48:A, 6p48:B, 6p49:A, 6p49:B, 6qpc:A, 6qpc:B
69 8cas:k 579 16 0.1000 0.0138 0.5000 7.5 5ll6:h, 6zce:k, 6zu9:k
70 8b8j:A 709 16 0.0875 0.0099 0.4375 7.5 8b8j:B, 8b8q:A, 8b8q:B, 8bc0:A, 6p46:A, 6p46:B, 8sun:A, 8sur:A, 8tag:A, 8tai:A, 8tal:A
71 8sun:B 743 16 0.0875 0.0094 0.4375 7.5 8b8k:A, 8b8k:B, 8b8m:A, 6qp6:A, 6qp6:B, 8sur:B, 8tag:B, 8tai:B, 8tal:B
72 4crm:P 608 16 0.1000 0.0132 0.5000 7.5 7a1g:x, 8cah:x, 3j16:B
73 8a8o:D 102 17 0.1375 0.1078 0.6471 7.9 8a8o:C
74 7vw6:A 913 21 0.1125 0.0099 0.4286 7.9 7e5z:A, 8j83:A, 7xqw:A
75 3bk7:A 593 18 0.1125 0.0152 0.5000 8.1 3j15:B, 5lw7:B, 1yqt:A, 5yv5:A
76 8b8m:B 682 16 0.0875 0.0103 0.4375 8.2
77 8hhl:A 592 24 0.0875 0.0118 0.2917 8.6 8hhm:A
78 8hio:A 567 24 0.0875 0.0123 0.2917 8.7
79 2gq3:A 720 25 0.1250 0.0139 0.4000 8.8 6apz:A, 6as6:A, 6asu:A, 6au9:A, 6axb:A, 6ba7:A, 6bu1:A, 6c2x:A, 6c6o:A, 5c7v:A, 6c7b:A, 6c8p:A, 5c9r:A, 5c9u:A, 5c9w:A, 5c9x:A, 5cah:A, 5cak:A, 5cbb:A, 5cbi:A, 5cbj:A, 5cc3:A, 5cc5:A, 5cc6:A, 5cc7:A, 5ccz:A, 5cew:A, 5cjm:A, 5cjn:A, 6dko:A, 6dl9:A, 6dlj:A, 6dnp:A, 5drc:A, 5dri:A, 5dx7:A, 5e9x:A, 5ecv:A, 2gq3:B, 5h8m:A, 5h8u:A, 5h8u:B, 1n8i:A, 1n8w:A, 1n8w:B, 3s9i:A, 3s9z:A, 3sad:A, 3saz:A, 3sb0:A, 5t8g:A
80 7t4g:A 493 20 0.1125 0.0183 0.4500 9.0 7t4g:C, 7t4g:E
81 2w3n:A 230 19 0.1000 0.0348 0.4211 9.4 2w3n:B, 2w3n:C, 2w3q:A
82 2d9l:A 134 23 0.1250 0.0746 0.4348 9.7 2olm:A
83 3vlm:A 663 30 0.1500 0.0181 0.4000 9.7 3vlm:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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