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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYV

The query sequence (length=54) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3hd7:B 98 54 1.0000 0.5510 1.0000 5.28e-34 3rk2:B, 5w5c:B
2 1l4a:B 82 53 0.8148 0.5366 0.8302 3.95e-28
3 1fio:A 190 33 0.3148 0.0895 0.5152 7.30e-05
4 1kc7:A 872 42 0.2407 0.0149 0.3095 0.13
5 4rew:A 411 39 0.3148 0.0414 0.4359 1.00
6 4zhx:A 409 36 0.2963 0.0391 0.4444 1.1 4cfe:C
7 6c9g:A 386 39 0.3148 0.0440 0.4359 1.1 6c9f:A, 6c9j:A, 6e4t:A, 6e4u:A, 6e4w:A, 7jhg:A, 5kq5:A, 7m74:A, 4qfg:A, 4qfr:A, 4qfs:A, 5t5t:A, 5ufu:A
8 6b1u:A 442 36 0.2963 0.0362 0.4444 1.2 4cfe:A, 4cff:A, 4cff:C, 5ezv:A, 5ezv:C, 5iso:C, 7myj:A
9 7myj:C 465 36 0.2963 0.0344 0.4444 1.2 3aqv:A, 6b1u:C, 6b2e:A, 8bik:A, 8bik:D, 5iso:A, 4zhx:C
10 6c9h:A 435 39 0.3148 0.0391 0.4359 1.2 4cfh:A
11 4rer:A 459 39 0.3148 0.0370 0.4359 1.3
12 6bx6:A 243 36 0.2963 0.0658 0.4444 3.2
13 6ywo:A 354 49 0.2593 0.0395 0.2857 4.8 6ywn:A, 6ywo:B, 6ywo:C, 6ywo:D
14 8qeo:A 2146 44 0.2222 0.0056 0.2727 4.9
15 8qen:A 2363 44 0.2222 0.0051 0.2727 5.1 9bja:A, 9bja:B, 2bvl:A, 2bvm:A, 6c0b:A, 7lou:A, 7lou:B, 7lov:A, 7lov:B, 3pa8:A, 3pa8:B, 3pee:B, 3pee:A, 7s0y:A, 5uqm:A, 5uqn:A, 5uqt:A, 5uqt:B
16 8y9b:B 1607 44 0.2222 0.0075 0.2727 5.3
17 7u0h:q 189 29 0.1667 0.0476 0.3103 7.1
18 4cys:A 534 25 0.1481 0.0150 0.3200 8.2 5aj9:A, 5aj9:B, 4cxk:A, 4cxk:B, 4cxs:A, 4cxs:B, 4cxu:A, 4cxu:B, 4cyr:A, 4cyr:B, 4cys:B, 1hdh:A, 1hdh:B
19 3lv0:A 258 43 0.2222 0.0465 0.2791 8.4 3luz:A, 3lv0:B
20 3luz:B 234 43 0.2222 0.0513 0.2791 8.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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