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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
ALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAAQRRDMMWICRDGDR
AKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPV
HMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFIEDSEAVVAVDA
VSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYL

The query sequence (length=317) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6bzo:F 326 317 1.0000 0.9724 1.0000 0.0 6c04:F, 6cce:F, 6ccv:F, 6dcf:F, 6edt:F, 6ee8:F, 6eec:F, 6fbv:F, 8hih:F, 7kif:F, 7kim:F, 7kin:F, 6m7j:F, 6ono:B, 6ono:D, 6onu:B, 6onu:D, 6onu:F, 6onu:H, 7p5x:AF, 5tw1:F, 7u22:F, 5uh5:F, 5uh6:F, 5uh8:F, 5uh9:F, 5uha:F, 5uhb:F, 5uhc:F, 5uhd:F, 5uhe:F, 5uhf:F, 5uhg:F, 5vi5:F, 5vi8:F, 6vvs:F, 6vvt:F, 6vvv:F, 6vvx:F, 6vvy:F, 6vvz:F, 6vw0:F
2 8k60:F 315 313 0.7823 0.7873 0.7923 0.0 8dy7:F, 8dy9:F, 8hvr:F, 8jke:F, 7vpd:F, 7vpz:F, 7x74:F, 7x75:F, 7x76:F
3 7ckq:F 272 302 0.5962 0.6949 0.6258 1.78e-133 7f75:F, 8x6f:E
4 7l7b:F 272 302 0.5710 0.6654 0.5993 1.06e-122
5 6n60:F 318 318 0.5237 0.5220 0.5220 1.01e-111 8igr:L, 8igs:L
6 8h3v:G 314 317 0.5300 0.5350 0.5300 9.01e-111 8h40:G
7 8gzg:F 314 316 0.5110 0.5159 0.5127 1.76e-106 8gzh:F
8 7rdq:F 349 348 0.5584 0.5072 0.5086 1.55e-105 2a68:F, 2a68:P, 2a69:F, 2a69:P, 6cuu:F, 5d4c:F, 5d4c:P, 5d4d:F, 5d4d:P, 5d4e:F, 5d4e:P, 5e17:F, 5e18:F, 7eh0:F, 7eh1:F, 7eh2:F, 7eh2:P, 4g7h:F, 4g7h:P, 4g7o:F, 4g7o:P, 4g7z:F, 4g7z:P, 5i2d:F, 5i2d:Q, 1iw7:F, 1iw7:P, 4ki2:A, 4ki2:B, 6kqd:F, 6kqd:P, 6kqe:F, 6kqf:F, 6kqg:F, 6kqh:F, 6kql:F, 6kqm:F, 6kqn:F, 1ku7:A, 6l74:F, 6lts:F, 7mlb:F, 7mli:F, 7mlj:F, 3n97:A, 4oin:F, 4oio:F, 4oip:F, 4oiq:F, 4oir:F, 6ovr:F, 6ovy:F, 6ow3:F, 6oy5:F, 6oy6:F, 6oy7:F, 6p70:F, 6p71:F, 4q4z:F, 4q5s:F, 1rio:H, 1smy:F, 5tjg:F, 3ugo:A, 3ugp:A, 5vo8:F, 5voi:F, 8w8n:F, 8w8o:F, 8w8p:F, 6wox:F, 6woy:F, 5x21:F, 5x22:F, 5x22:P, 4xln:F, 4xln:L, 4xlp:F, 4xlp:L, 4xlq:F, 4xlq:L, 4xlr:F, 4xlr:L, 4xls:F, 4xls:L
9 8u3b:F 431 238 0.4511 0.3318 0.6008 1.15e-102
10 8u3b:F 431 43 0.0568 0.0418 0.4186 0.002
11 3iyd:F 479 238 0.4511 0.2985 0.6008 2.11e-102
12 7ye1:F 497 242 0.4511 0.2877 0.5909 4.29e-101 7ye2:F, 5yix:A
13 7ye1:F 497 31 0.0568 0.0362 0.5806 0.003 7ye2:F, 5yix:A
14 6psr:L 548 238 0.4511 0.2609 0.6008 4.90e-101 6n58:L, 6n61:F
15 6psr:L 548 44 0.0568 0.0328 0.4091 0.001 6n58:L, 6n61:F
16 4kn7:X 517 235 0.4479 0.2747 0.6043 3.15e-100
17 4kn7:X 517 49 0.0599 0.0368 0.3878 0.005
18 6wmr:Z 470 240 0.4132 0.2787 0.5458 1.59e-91 6wmt:Z
19 6wmr:Z 470 33 0.0410 0.0277 0.3939 0.79 6wmt:Z
20 6n4c:F 558 239 0.4385 0.2491 0.5816 2.98e-91 8ad1:F, 6b6h:F, 7bef:F, 7beg:F, 7c17:F, 7c97:F, 6ca0:F, 7chw:F, 7dy6:F, 8ftd:L, 6jnx:F, 8jo2:F, 6k4y:F, 7khb:F, 7khc:F, 7khe:F, 7khi:F, 6ldi:F, 7mkd:L, 7mke:L, 7mki:L, 7mkj:L, 7n4e:F, 6n57:L, 6n62:F, 6oul:L, 6p18:F, 2p7v:B, 6pb4:F, 6pb5:F, 6pb6:F, 6psq:L, 6pss:L, 6pst:L, 6psu:L, 6psv:L, 6psw:L, 7szj:F, 8to1:L, 8to6:L, 8to8:L, 8toe:L, 8tom:L, 5vt0:L, 7vwy:F, 7vwz:F, 7w5w:F, 7w5x:F, 7w5y:F, 6wmu:F, 6xh7:F, 6xh8:F, 6xl5:F, 6xl9:F, 6xlj:F, 6xll:F, 8y6u:F, 4yln:F, 4yln:L, 4yln:R, 4ylo:F, 4ylo:L, 4ylo:R, 4ylp:F, 4ylp:L, 4ylp:R
21 6n4c:F 558 45 0.0568 0.0323 0.4000 0.001 8ad1:F, 6b6h:F, 7bef:F, 7beg:F, 7c17:F, 7c97:F, 6ca0:F, 7chw:F, 7dy6:F, 8ftd:L, 6jnx:F, 8jo2:F, 6k4y:F, 7khb:F, 7khc:F, 7khe:F, 7khi:F, 6ldi:F, 7mkd:L, 7mke:L, 7mki:L, 7mkj:L, 7n4e:F, 6n57:L, 6n62:F, 6oul:L, 6p18:F, 2p7v:B, 6pb4:F, 6pb5:F, 6pb6:F, 6psq:L, 6pss:L, 6pst:L, 6psu:L, 6psv:L, 6psw:L, 7szj:F, 8to1:L, 8to6:L, 8to8:L, 8toe:L, 8tom:L, 5vt0:L, 7vwy:F, 7vwz:F, 7w5w:F, 7w5x:F, 7w5y:F, 6wmu:F, 6xh7:F, 6xh8:F, 6xl5:F, 6xl9:F, 6xlj:F, 6xll:F, 8y6u:F, 4yln:F, 4yln:L, 4yln:R, 4ylo:F, 4ylo:L, 4ylo:R, 4ylp:F, 4ylp:L, 4ylp:R
22 7f0r:F 278 294 0.3628 0.4137 0.3912 7.77e-64
23 6omf:F 278 298 0.3659 0.4173 0.3893 2.66e-59 5ipl:F, 5ipm:F, 5ipn:F, 6kj6:F, 6utv:FFF, 6utw:FFF, 6utx:FFF, 6uty:FFF, 6utz:FFF, 6uu0:FFF, 6uu1:FFF, 6uu2:FFF, 6uu3:FFF, 6uu4:FFF, 6uu5:FFF, 6uu6:FFF, 6uu7:FFF, 6uu8:FFF, 6uu9:FFF, 6uua:FFF, 6uub:FFF, 6uuc:FFF
24 8cwr:B 109 82 0.2587 0.7523 1.0000 2.10e-51 8cwt:B, 8cwt:D, 8cwt:F, 8cyf:B, 7kuf:B
25 7ubm:F 353 128 0.2082 0.1870 0.5156 4.46e-37 7ubn:F
26 7ubm:F 353 55 0.0883 0.0793 0.5091 1.35e-09 7ubn:F
27 7ubm:F 353 43 0.0568 0.0510 0.4186 0.003 7ubn:F
28 7xya:F 302 74 0.1735 0.1821 0.7432 3.81e-35
29 7xya:F 302 34 0.0536 0.0563 0.5000 0.003
30 8hkc:E 262 228 0.2240 0.2710 0.3114 2.71e-23
31 6pfv:G 223 200 0.2145 0.3049 0.3400 8.68e-15 6pfj:A, 6pfv:A, 6pfv:D
32 6pmi:F 239 200 0.1798 0.2385 0.2850 1.55e-11 6pmj:F
33 8x6g:H 244 237 0.1767 0.2295 0.2363 7.83e-10
34 6ido:A 86 66 0.0789 0.2907 0.3788 1.69e-04 6ido:B
35 7l5s:A 771 52 0.0536 0.0220 0.3269 0.28 7l5i:A
36 7x2y:A 342 52 0.0442 0.0409 0.2692 0.37 7x1x:A, 7x1x:B, 7x2y:B
37 5or5:A 95 72 0.0820 0.2737 0.3611 0.50
38 7lq4:A 192 62 0.0757 0.1250 0.3871 0.51
39 7lq4:A 192 57 0.0757 0.1250 0.4211 0.63
40 7ezx:M1 162 110 0.0820 0.1605 0.2364 1.2 7ezx:I1, 7ezx:E1, 7ezx:E7, 7ezx:K7, 7ezx:I7, 7ezx:G7, 7ezx:C7, 7ezx:M9, 7ezx:K9, 7ezx:I9, 7ezx:G9, 7ezx:E9, 7ezx:C9, 7ezx:MF, 7ezx:KF, 7ezx:IF, 7ezx:GF, 7ezx:EF, 7ezx:CF, 7ezx:MI, 7ezx:KI, 7ezx:II, 7ezx:GI, 7ezx:EI, 7ezx:CI, 7ezx:MK, 7ezx:EK, 6kgx:M2, 6kgx:G2, 6kgx:I2, 6kgx:E2, 6kgx:M6, 6kgx:G6, 6kgx:I6, 6kgx:K6, 6kgx:E6, 6kgx:C6, 6kgx:G7, 6kgx:E7, 6kgx:MB, 6kgx:GB, 6kgx:IB, 6kgx:KB, 6kgx:EB, 6kgx:CB, 6kgx:IF, 6kgx:GF, 6kgx:EF, 6kgx:MF, 6kgx:MI, 6kgx:GI, 6kgx:II, 6kgx:EI, 7y4l:MB, 7y4l:GB, 7y4l:IB, 7y4l:EB, 7y4l:IC, 7y4l:GC, 7y4l:EC, 7y4l:MC, 7y4l:MD, 7y4l:GD, 7y4l:ID, 7y4l:KD, 7y4l:ED, 7y4l:CD, 7y4l:ME, 7y4l:IE, 7y4l:GE, 7y4l:KE, 7y4l:EE, 7y4l:CE, 7y4l:E2, 7y4l:M2, 7y4l:I2, 7y4l:G2, 7y4l:G6, 7y4l:I6, 7y4l:E6, 7y4l:M6, 7y4l:KC, 7y5e:ME, 7y5e:GE, 7y5e:IE, 7y5e:KE, 7y5e:EE, 7y5e:CE, 7y5e:MG, 7y5e:GG, 7y5e:IG, 7y5e:KG, 7y5e:EG, 7y5e:CG, 7y5e:IH, 7y5e:GH, 7y5e:EH, 7y5e:MH, 7y5e:MO, 7y5e:GO, 7y5e:IO, 7y5e:EO, 7y5e:E1, 7y5e:M1, 7y5e:I1, 7y5e:G1, 7y5e:G4, 7y5e:I4, 7y5e:E4, 7y5e:M4, 7y7a:M1, 7y7a:G1, 7y7a:I1, 7y7a:K1, 7y7a:E1, 7y7a:C1, 7y7a:M4, 7y7a:G4, 7y7a:I4, 7y7a:E4, 7y7a:M8, 7y7a:G8, 7y7a:I8, 7y7a:K8, 7y7a:E8, 7y7a:C8, 7y7a:II, 7y7a:GI, 7y7a:EI, 7y7a:MI, 7y7a:MK, 7y7a:GK, 7y7a:IK, 7y7a:KK, 7y7a:EK, 7y7a:CK, 7y7a:IP, 7y7a:GP, 7y7a:EP, 7y7a:MP, 7y7a:MR, 7y7a:GR, 7y7a:IR, 7y7a:KR, 7y7a:ER, 7y7a:CR, 7y7a:CS, 7y7a:IS, 7y7a:GS, 7y7a:ES, 7y7a:MS, 7y7a:Me, 7y7a:Ge, 7y7a:Ie, 7y7a:Ee, 7y7a:Mj, 7y7a:Gj, 7y7a:Ij, 7y7a:Ej, 7y7a:Cl, 7y7a:Il, 7y7a:Gl, 7y7a:El, 7y7a:Ml, 7y7a:Mn, 7y7a:Gn, 7y7a:In, 7y7a:En
41 3rp6:A 392 94 0.0852 0.0689 0.2872 1.9 3rp7:A, 3rp8:A
42 2x4h:C 131 40 0.0379 0.0916 0.3000 2.1 2x4h:A, 2x4h:B, 2x4h:D
43 2zi0:A 60 19 0.0315 0.1667 0.5263 5.5 3cz3:A, 3cz3:B, 3cz3:D, 3cz3:C, 2zi0:B
44 6db6:H 226 16 0.0315 0.0442 0.6250 6.2
45 8hhl:A 592 29 0.0442 0.0236 0.4828 6.5 8hhm:A
46 8hio:A 567 29 0.0442 0.0247 0.4828 6.8
47 1ex9:A 285 72 0.0631 0.0702 0.2778 7.0
48 7phw:E 226 21 0.0284 0.0398 0.4286 8.1 7phw:B, 7pi3:F, 7pi3:M, 7pi3:T, 7pi3:a
49 4kv3:A 456 75 0.0631 0.0439 0.2667 8.2 4kv3:B
50 2art:A 247 39 0.0410 0.0526 0.3333 8.6 2ars:A, 2aru:A, 2c8m:A, 2c8m:B, 2c8m:C, 2c8m:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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