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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ALQLWQFLVALLDDPTNAHFIAWTGRGMEFKLIEPEEVARLWGIQKNRPAMNYDKLSRSLRYYYEKGIMQKVAGERYVYK
FVCEPDALFSMAFPD

The query sequence (length=95) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4uuv:A 96 95 1.0000 0.9896 1.0000 6.56e-69 4bnc:A, 4uno:A, 4uuv:D, 4uuv:G, 4uuv:J, 4uuv:M, 4uuv:P, 4uuv:S, 4uuv:V
2 6da1:B 138 89 0.5684 0.3913 0.6067 4.81e-37 4bqa:D, 4bqa:G, 6da1:A, 6dat:B, 6dat:C, 6dat:D, 6dat:A, 1k78:B, 1k78:F, 1k79:A, 1k79:D, 1k7a:A, 1k7a:D, 4l0y:B, 4l0z:B, 4l18:B, 4l18:F, 4lg0:B, 1mdm:B, 3mfk:A, 3mfk:B, 2nny:A, 2nny:B, 3ri4:A, 3ri4:D, 2stt:A, 2stw:A, 3wts:C, 3wts:H, 3wtt:C, 3wtt:H, 3wtu:C, 3wtu:H, 3wtv:C, 3wtv:H, 3wtw:C, 3wtw:H, 3wtx:C, 3wtx:H, 3wty:C, 3wty:H, 3wu1:B, 5zmc:B
3 4bqa:A 132 91 0.5579 0.4015 0.5824 1.77e-36
4 1dux:C 86 86 0.5474 0.6047 0.6047 8.91e-36 1dux:F
5 6vgd:A 98 80 0.5263 0.5102 0.6250 2.01e-33 5e8g:A, 5e8g:B, 5e8g:C, 5e8g:D, 5e8i:A, 5e8i:D, 5e8i:G, 5e8i:J, 4iri:A, 5jvt:A, 5jvt:D, 5jvt:G, 6vg2:A, 6vg2:D, 6vg8:A, 6vge:A, 6vgg:A, 5ybd:A, 5ybd:X
6 3zp5:A 92 80 0.5368 0.5543 0.6375 6.04e-33
7 1hbx:G 112 74 0.4842 0.4107 0.6216 3.06e-31 1bc7:C, 1bc8:C, 1hbx:H, 1k6o:A
8 1awc:A 110 89 0.5053 0.4364 0.5393 3.21e-30
9 7jsa:J 88 80 0.4526 0.4886 0.5375 1.47e-26 7jsl:J, 7jsl:E, 7jsl:H, 7jsl:L
10 8bzm:H 88 88 0.4632 0.5000 0.5000 4.02e-24 8bzm:B
11 1yo5:C 88 84 0.4842 0.5227 0.5476 6.91e-23
12 8e67:F 97 88 0.3789 0.3711 0.4091 1.86e-21 8e66:A, 8e66:F, 8e67:A, 8e67:I, 8e67:L, 4mhg:A
13 3jtg:A 95 84 0.3789 0.3789 0.4286 8.79e-17
14 8eo4:F 95 87 0.3263 0.3263 0.3563 1.24e-08 8e3k:F, 8e3r:F, 8e4h:F, 8e5y:F, 8ebh:F, 8ee9:F, 8ej6:F, 8ej8:F, 8ek3:F, 8ek8:F, 8ek8:E, 8ekj:F, 8eku:F, 8ekv:F, 8ekz:F, 8em9:F, 8emd:F, 8eng:F, 8eo1:F, 8eqg:F, 8eqk:F, 8eql:F, 8evh:O, 8evi:O, 8evj:O, 1pue:E, 1pue:F, 8smh:F, 8smj:F, 8sp1:F, 8t9u:F, 8vdh:F, 8vdi:F
15 5a96:A 249 65 0.1895 0.0723 0.2769 0.34 8qph:A, 8qqc:A
16 7y60:L 354 51 0.1474 0.0395 0.2745 0.60
17 7bpo:A 165 63 0.1895 0.1091 0.2857 1.1 7bpo:B, 7br1:A, 7br1:B
18 5g3z:A 215 44 0.1368 0.0605 0.2955 1.2 5g40:A, 5g41:A
19 3fb4:A 215 45 0.1158 0.0512 0.2444 1.9
20 7cfe:A 214 21 0.1158 0.0514 0.5238 3.0
21 2e85:B 157 65 0.1579 0.0955 0.2308 3.2 2e85:A
22 8ov0:A 110 57 0.1368 0.1182 0.2281 3.5
23 3vnq:A 497 55 0.1474 0.0282 0.2545 7.1 3vnr:A, 3vns:A
24 6wao:B 406 61 0.2421 0.0567 0.3770 7.7

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417