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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
ALLNIFDIAGSALAAQSKRLNVAASNLANADSVTGPDGQPYRAKQVVFQVDAAPGQATGGVKVASVIESQAPEKLVYEPG
NPLADANGYVKMPNVDVVGEMVNTMSASRSYQANIEVLNTVKSMMLKTLTLGQ

The query sequence (length=133) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8wk3:V 133 133 1.0000 1.0000 1.0000 9.21e-94 7cg0:h, 7cg0:f, 7cg0:i, 7cg0:j, 7cg0:p, 7cgo:h, 7cgo:f, 7cgo:i, 7cgo:j, 7cgo:p, 7e80:h, 7e80:f, 7e80:i, 7e80:j, 7e80:p, 7e82:h, 7e82:f, 7e82:i, 7e82:j, 7e82:p, 8wk3:W, 8wk3:X, 8wk3:Y, 8wk3:Z, 8wk3:a, 8wkk:V, 8wkk:a, 8wkk:W, 8wkk:X, 8wkk:Y, 8wkk:Z, 8wkq:V, 8wkq:a, 8wkq:W, 8wkq:X, 8wkq:Y, 8wkq:Z, 8wl2:BA, 8wl2:BF, 8wl2:BB, 8wl2:BC, 8wl2:BD, 8wl2:BE, 8wlh:V, 8wlh:a, 8wlh:W, 8wlh:X, 8wlh:Y, 8wlh:Z, 8wln:V, 8wln:a, 8wln:W, 8wln:X, 8wln:Y, 8wln:Z, 8wlq:V, 8wlq:a, 8wlq:W, 8wlq:X, 8wlq:Y, 8wlq:Z, 8wlt:BA, 8wlt:BF, 8wlt:BB, 8wlt:BC, 8wlt:BD, 8wlt:BE, 8wo5:BA, 8wo5:BF, 8wo5:BB, 8wo5:BC, 8wo5:BD, 8wo5:BE, 8woe:BA, 8woe:BF, 8woe:BB, 8woe:BC, 8woe:BD, 8woe:BE
2 8wkk:u 254 44 0.1203 0.0630 0.3636 0.006 8wl2:AI, 8woe:AI
3 8wkk:u 254 77 0.1805 0.0945 0.3117 1.1 8wl2:AI, 8woe:AI
4 1s9i:A 303 55 0.1128 0.0495 0.2727 0.057 1s9i:B
5 8wkq:Q 134 131 0.2782 0.2761 0.2824 0.28 8wkq:R, 8wkq:S, 8wkq:T, 8wkq:U, 8wl2:A6, 8wl2:A7, 8wl2:A8, 8wl2:A9, 8wl2:A0, 8wln:Q, 8wln:R, 8wln:S, 8wln:T, 8wln:U, 8wlt:A6, 8wlt:A7, 8wlt:A8, 8wlt:A9, 8wlt:A0, 8wo5:A6, 8wo5:A7, 8wo5:A8, 8wo5:A9, 8wo5:A0, 8woe:A6, 8woe:A7, 8woe:A8, 8woe:A9, 8woe:A0
6 8wk3:Q 119 122 0.2632 0.2941 0.2869 0.32 7cg0:k, 7cg0:n, 7cg0:o, 7cgo:k, 7cgo:n, 7cgo:o, 7e80:k, 7e80:n, 7e80:o, 7e82:k, 7e82:n, 7e82:o, 8wk3:R, 8wk3:S, 8wk3:T, 8wkk:Q, 8wkk:R, 8wkk:S, 8wkk:T, 8wlh:Q, 8wlh:R, 8wlh:S, 8wlh:T, 8wlq:Q, 8wlq:R, 8wlq:S, 8wlq:T
7 1zap:A 341 39 0.1128 0.0440 0.3846 0.51 1eag:A, 3pvk:A, 3q70:A
8 6sxu:AAA 500 26 0.0827 0.0220 0.4231 1.9 1pz2:A, 1pz2:B, 1qw8:A, 1qw8:B, 1qw9:A, 1qw9:B, 6sxu:BBB, 6sxv:A, 6sxv:B
9 7btb:m 469 33 0.1128 0.0320 0.4545 2.1 7bt6:m, 6ft6:m, 3jct:m, 6m62:m, 7oh3:m, 7ohq:m, 7oht:m, 7ug6:m, 7uoo:m, 7uqb:m, 7uqz:m, 7uui:m, 7v08:m, 6ylg:m, 6ylh:m
10 3aki:A 448 80 0.1805 0.0536 0.3000 2.9 3akg:A, 3akh:A
11 4ysb:A 225 63 0.1504 0.0889 0.3175 3.3 4ysb:B
12 4hpp:A 426 30 0.0902 0.0282 0.4000 3.8
13 1dbg:A 481 95 0.1579 0.0437 0.2211 7.2 1dbo:A, 1ofl:A, 1ofm:A
14 6k52:A 428 65 0.1203 0.0374 0.2462 8.4 6k54:A, 6k54:B, 6k54:C, 6k55:A, 6k55:B, 6k55:C
15 8csz:D 494 24 0.0752 0.0202 0.4167 8.5
16 1f9w:A 300 51 0.1128 0.0500 0.2941 8.8 1f9w:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218